Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   VKS18_RS04245 Genome accession   NZ_CP141895
Coordinates   834853..835644 (+) Length   263 a.a.
NCBI ID   WP_032872395.1    Uniprot ID   -
Organism   Bacillus velezensis strain B004     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 829853..840644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKS18_RS04220 (VKS18_13645) - 831847..832731 (+) 885 WP_032872386.1 PhzF family phenazine biosynthesis isomerase -
  VKS18_RS04225 (VKS18_13650) - 832808..833392 (+) 585 WP_032872389.1 nitroreductase -
  VKS18_RS04230 (VKS18_13655) - 833432..833623 (-) 192 WP_003155508.1 YfhD family protein -
  VKS18_RS04235 (VKS18_13660) - 833694..833804 (-) 111 WP_003155504.1 YfhE family protein -
  VKS18_RS04240 (VKS18_13665) - 833862..834761 (-) 900 WP_032872392.1 TIGR01777 family oxidoreductase -
  VKS18_RS04245 (VKS18_13670) recX 834853..835644 (+) 792 WP_032872395.1 recombination regulator RecX Regulator
  VKS18_RS04250 (VKS18_13675) - 835651..835965 (+) 315 WP_007408553.1 YfhH family protein -
  VKS18_RS04255 (VKS18_13680) - 836110..837303 (+) 1194 WP_025284446.1 MFS transporter -
  VKS18_RS04260 (VKS18_13685) - 837343..837732 (-) 390 WP_032872398.1 DUF2606 family protein -
  VKS18_RS04265 (VKS18_13690) - 837695..838606 (-) 912 WP_032872401.1 serine protease -
  VKS18_RS04270 (VKS18_13695) - 838752..838904 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  VKS18_RS04275 (VKS18_13700) - 839028..839297 (+) 270 WP_003155492.1 YfhJ family protein -
  VKS18_RS04280 (VKS18_13705) - 839429..839956 (+) 528 WP_032872403.1 SH3 domain-containing protein -
  VKS18_RS04285 (VKS18_13710) - 840042..840377 (+) 336 WP_032872405.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 31050.24 Da        Isoelectric Point: 6.0921

>NTDB_id=920340 VKS18_RS04245 WP_032872395.1 834853..835644(+) (recX) [Bacillus velezensis strain B004]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRYDLKKGKELDELDILEIQYGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHISKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=920340 VKS18_RS04245 WP_032872395.1 834853..835644(+) (recX) [Bacillus velezensis strain B004]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTATGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGTACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGCGATCATCTGAAGAAAAAAGAAACACCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCCGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGTGCGTTTACATTTGATGAGCAGATACAAGAA
GCGCTGAAACATATCAGCAAAATCCTGAAAAAGGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAGCAGACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGCTATGACGGCAGCTATGAAAGCGGAATGAAG
GTTAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.087

100

0.791