Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   VKS18_RS01850 Genome accession   NZ_CP141895
Coordinates   356499..356663 (+) Length   54 a.a.
NCBI ID   WP_269194677.1    Uniprot ID   -
Organism   Bacillus velezensis strain B004     
Function   preventing the degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context

Location: 351499..361663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKS18_RS01845 (VKS18_11270) srfAB 353444..356434 (+) 2991 Protein_323 surfactin non-ribosomal peptide synthetase SrfAB -
  VKS18_RS01850 (VKS18_11275) comS 356499..356663 (+) 165 WP_269194677.1 competence protein ComS Regulator

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 6211.19 Da        Isoelectric Point: 11.7559

>NTDB_id=920335 VKS18_RS01850 WP_269194677.1 356499..356663(+) (comS) [Bacillus velezensis strain B004]
MRARRSSSLNRSDKRLIRSIILFPQHSAGCISLISSDRPARATTSLLYFCWKDQ

Nucleotide


Download         Length: 165 bp        

>NTDB_id=920335 VKS18_RS01850 WP_269194677.1 356499..356663(+) (comS) [Bacillus velezensis strain B004]
ATGAGAGCGAGGAGGAGCAGCAGTTTGAACCGATCCGACAAGCGCCTTATCAGAAGCATTATCCTGTTTCCTCAGCACAG
CGCAGGATGTATATCCTTAATCAGCTCGGACAGGCCAGCACGAGCTACAACGTCCCTGCTGTACTTCTGCTGGAAGGATC
AGTAG

Domains

Predicted by InterproScan.

Bacillus competence protein S (ComS)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Bacillus subtilis subsp. subtilis str. 168

58.696

85.185

0.5