Detailed information NTG0920319

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AB3N46_RS05125
• Genome accession: NZ_CP162161
• Coordinates: 1046334..1047326 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain STS63-2-E
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1041334..1052326

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB3N46_RS05095 (AB3N46_05100)	ispD	1041395..1042105 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AB3N46_RS05100 (AB3N46_05105)	ispF	1042105..1042584 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AB3N46_RS05105 (AB3N46_05110)	truD	1042581..1043630 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
AB3N46_RS05110 (AB3N46_05115)	surE	1043611..1044372 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AB3N46_RS05115 (AB3N46_05120)	pcm	1044366..1044992 (+)	627	WP_406811766.1	protein-L-isoaspartate O-methyltransferase	-
AB3N46_RS05120 (AB3N46_05125)	nlpD	1045177..1046271 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
AB3N46_RS05125 (AB3N46_05130)	rpoS	1046334..1047326 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AB3N46_RS05130 (AB3N46_05135)	ygbN	1047390..1048754 (-)	1365	WP_000104459.1	GntP family transporter	-
AB3N46_RS05135 (AB3N46_05140)	ygbM	1048843..1049619 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
AB3N46_RS05140 (AB3N46_05145)	ygbL	1049624..1050262 (-)	639	WP_001278994.1	aldolase	-
AB3N46_RS05145 (AB3N46_05150)	otnK	1050259..1051521 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=920319 AB3N46_RS05125 WP_000081550.1 1046334..1047326(+) (rpoS) [Escherichia coli strain STS63-2-E]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=920319 AB3N46_RS05125 WP_000081550.1 1046334..1047326(+) (rpoS) [Escherichia coli strain STS63-2-E]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715