Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   OCV50_RS14800 Genome accession   NZ_AP025488
Coordinates   46348..47580 (-) Length   410 a.a.
NCBI ID   WP_261905253.1    Uniprot ID   -
Organism   Vibrio fortis strain LMG 21557     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 41348..52580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV50_RS14780 - 41980..42201 (-) 222 WP_261904715.1 hypothetical protein -
  OCV50_RS14785 - 42198..42422 (-) 225 WP_261904716.1 hypothetical protein -
  OCV50_RS14790 - 42614..43420 (-) 807 WP_261904717.1 hypothetical protein -
  OCV50_RS14795 - 44219..46264 (+) 2046 WP_261904718.1 hybrid sensor histidine kinase/response regulator -
  OCV50_RS14800 cqsA 46348..47580 (-) 1233 WP_261905253.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  OCV50_RS14805 - 48495..49715 (+) 1221 WP_238972468.1 DNA cytosine methyltransferase -
  OCV50_RS14810 - 49654..51543 (-) 1890 WP_261904719.1 ATP-dependent endonuclease -
  OCV50_RS14815 - 51723..52433 (-) 711 WP_261904720.1 hypothetical protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45738.04 Da        Isoelectric Point: 6.4376

>NTDB_id=92031 OCV50_RS14800 WP_261905253.1 46348..47580(-) (cqsA) [Vibrio fortis strain LMG 21557]
MYSCQRWRFSVLRRELTMSNNSKTKPLPSFVEERLNDFIQDLIAPNMNQKHLVLGQRPRPSSVVMQSNDYLALSNHPDIQ
QAHRDAIKNDGQSVVMSSIFLQDKDSKPEFEQQLAELVGMESCLLSQSGWAANVGLLQTICTANTPVYIDHYAHMSLWEG
IRAANAVARPFRHNDMIHLRKQLQRHGAGVIVVDSVYSTIGTVAPLADIYEMAQEFGCALIVDESHSLGTHGKQGAGLVH
ALGLTEQVDFMTVSLAKAFAYRAGAILGPKSMADSLPFVAFPAIFSSTVLPEEVSRLEKTLQVIKSADERRERLFEYSTL
LKDGLSKIGFNIRSDSQIIALECGDERNTEKVRDFLENSDVFGAVFCRPATAKNNNIIRFSVNSDLSMSDIDHVLTVCQQ
AYNHKELQFA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=92031 OCV50_RS14800 WP_261905253.1 46348..47580(-) (cqsA) [Vibrio fortis strain LMG 21557]
ATATACAGCTGTCAGCGCTGGCGTTTTTCTGTATTACGAAGAGAACTTACTATGAGTAATAATTCTAAAACAAAACCATT
ACCTTCCTTTGTTGAGGAACGCCTTAACGACTTTATTCAAGATCTGATTGCACCAAACATGAACCAAAAGCACTTGGTAC
TGGGTCAACGCCCGAGGCCTAGTTCTGTTGTAATGCAAAGCAATGATTACTTGGCCTTGTCGAATCACCCAGATATCCAA
CAAGCGCATCGAGACGCAATTAAAAACGATGGTCAAAGCGTTGTGATGTCTTCGATCTTTTTGCAAGACAAAGACTCTAA
ACCAGAGTTTGAGCAACAATTAGCAGAGCTAGTAGGAATGGAGAGTTGCTTGCTGTCTCAGTCTGGCTGGGCAGCGAACG
TCGGTTTATTGCAAACGATATGTACTGCAAATACGCCTGTCTATATCGATCACTATGCCCACATGTCGCTCTGGGAGGGT
ATACGCGCAGCCAATGCGGTTGCTCGTCCATTTCGACACAACGACATGATTCATCTGCGCAAACAGCTTCAACGCCATGG
CGCCGGTGTGATTGTGGTCGACTCGGTTTATAGCACGATTGGTACTGTCGCTCCTCTCGCTGACATCTACGAAATGGCTC
AAGAGTTTGGCTGCGCATTAATTGTCGATGAGTCCCATTCACTAGGGACCCATGGGAAGCAAGGAGCAGGTCTAGTGCAT
GCACTTGGGCTTACTGAGCAAGTTGATTTTATGACTGTAAGTTTGGCTAAAGCCTTTGCCTATCGAGCTGGTGCGATTCT
TGGTCCTAAATCGATGGCGGATTCACTGCCTTTTGTCGCGTTTCCTGCAATATTTAGCTCGACGGTGTTGCCTGAGGAAG
TGAGTCGTTTAGAGAAAACACTGCAGGTTATTAAAAGTGCTGACGAGAGACGGGAGCGGTTGTTTGAGTACTCTACATTA
CTGAAAGATGGCTTGTCTAAGATAGGATTCAATATTCGCAGTGATTCTCAGATTATTGCATTGGAATGTGGGGATGAACG
AAATACCGAAAAAGTTAGAGACTTCTTAGAAAACAGCGATGTGTTTGGCGCGGTATTTTGCCGGCCTGCAACCGCGAAAA
ATAACAACATCATCCGCTTTTCTGTGAATTCTGATTTGAGCATGAGTGACATTGATCATGTGTTGACGGTGTGCCAGCAA
GCATACAATCACAAGGAACTACAGTTTGCGTAG

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(64-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

56.848

94.39

0.537

Multiple sequence alignment