Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AB3N50_RS08490 Genome accession   NZ_CP162160
Coordinates   1760037..1760666 (+) Length   209 a.a.
NCBI ID   WP_000839152.1    Uniprot ID   -
Organism   Escherichia coli strain STS73-1-E     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1755037..1765666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3N50_RS08470 (AB3N50_08465) ycbZ 1755438..1757198 (-) 1761 WP_000156518.1 Lon protease family protein -
  AB3N50_RS08475 (AB3N50_08470) matP 1757384..1757836 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AB3N50_RS08480 (AB3N50_08475) ompA 1757912..1758952 (-) 1041 WP_000750416.1 porin OmpA -
  AB3N50_RS08485 (AB3N50_08480) sulA 1759309..1759818 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AB3N50_RS08490 (AB3N50_08485) sxy/tfoX 1760037..1760666 (+) 630 WP_000839152.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AB3N50_RS08495 (AB3N50_08490) yccS 1760629..1762791 (-) 2163 WP_023281787.1 YccS family putative transporter -
  AB3N50_RS08500 (AB3N50_08495) yccF 1762801..1763247 (-) 447 WP_001261235.1 YccF domain-containing protein -
  AB3N50_RS08505 (AB3N50_08500) helD 1763370..1765424 (+) 2055 WP_033554506.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24093.97 Da        Isoelectric Point: 8.8133

>NTDB_id=920252 AB3N50_RS08490 WP_000839152.1 1760037..1760666(+) (sxy/tfoX) [Escherichia coli strain STS73-1-E]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVACRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=920252 AB3N50_RS08490 WP_000839152.1 1760037..1760666(+) (sxy/tfoX) [Escherichia coli strain STS73-1-E]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCATG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995