Detailed information NTG0092024

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: OCV50_RS13340
• Genome accession: NZ_AP025487
• Coordinates: 3001100..3002104 (+)
• Length: 334 a.a.
• NCBI ID: WP_261903255.1
• Uniprot ID: -
• Organism: Vibrio fortis strain LMG 21557
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2996100..3007104

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCV50_RS13320	metJ	2996143..2996463 (+)	321	WP_004415993.1	met regulon transcriptional regulator MetJ	-
OCV50_RS13325	-	2996627..2997913 (-)	1287	WP_239841934.1	malic enzyme-like NAD(P)-binding protein	-
OCV50_RS13330	rpmE	2998122..2998340 (-)	219	WP_239841935.1	50S ribosomal protein L31	-
OCV50_RS13335	priA	2998664..3000865 (+)	2202	WP_261903254.1	primosomal protein N'	-
OCV50_RS13340	cytR	3001100..3002104 (+)	1005	WP_261903255.1	DNA-binding transcriptional regulator CytR	Regulator
OCV50_RS13345	-	3002226..3002759 (+)	534	WP_261904163.1	SPOR domain-containing protein	-
OCV50_RS13350	hslV	3002960..3003508 (+)	549	WP_032549976.1	ATP-dependent protease subunit HslV	-
OCV50_RS13355	hslU	3003560..3004894 (+)	1335	WP_261903256.1	HslU--HslV peptidase ATPase subunit	-
OCV50_RS13360	-	3005054..3005971 (+)	918	WP_261903257.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
OCV50_RS13365	rraA	3006045..3006563 (+)	519	WP_032549971.1	ribonuclease E activity regulator RraA	-
OCV50_RS13370	zapB	3006635..3006877 (-)	243	WP_032549970.1	cell division protein ZapB	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36540.01 Da
• Isoelectric Point: 6.3471

>NTDB_id=92024 OCV50_RS13340 WP_261903255.1 3001100..3002104(+) (cytR) [Vibrio fortis strain LMG 21557]
MATMKDVAQLAGVSTATVSRALMNPEKVSVSTRKRVETAVLEAGYSPNTLARNLRRNESKTIITIVPDICDPYFAEIIRG
IEDAAVENDYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDHPFDVSKAEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLAQLGHKRIAQISGPTSATLCQFRQQGYQQALRRAGVTMNPAYSTVGDFTFEAGAQAVRQLLALPEQPTA
IFCHNDAMAIGAIQEAKKLGLRVPHDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLDMLKGNDVQAGSRLLE
AKLVVRGSTAPPRL

Nucleotide

• Length: 1005 bp

>NTDB_id=92024 OCV50_RS13340 WP_261903255.1 3001100..3002104(+) (cytR) [Vibrio fortis strain LMG 21557]
ATGGCGACAATGAAGGATGTTGCCCAGTTGGCAGGCGTATCAACAGCGACGGTATCACGAGCGCTAATGAACCCTGAAAA
AGTATCGGTGAGCACTCGAAAACGAGTTGAAACAGCGGTACTCGAAGCTGGATACTCACCCAACACTTTAGCTAGAAATT
TACGTCGCAACGAATCTAAAACCATCATCACCATCGTTCCTGATATCTGTGATCCCTACTTCGCTGAGATCATTCGCGGT
ATTGAAGACGCTGCGGTTGAAAACGACTACTTGGTTCTTCTAGGTGATAGCGGACAACAGAAAAAACGTGAGAGCTCGTT
TGTAAACTTGGTTTTCACCAAACAAGCAGACGGCATGCTACTACTCGGCACAGACCACCCATTCGATGTCAGCAAAGCAG
AGCAGAAAAACCTGCCACCAATGGTAATGGCATGTGAGTTCGCCCCAGAGCTTGAGTTGCCCACTGTACACATCGATAAC
CTGACTTCTGCATTTGAAGCGGTGAACTACCTAGCTCAACTGGGTCACAAACGTATCGCGCAAATCTCCGGCCCGACATC
AGCAACTCTCTGCCAATTCCGTCAACAGGGCTATCAACAAGCTCTACGACGCGCAGGGGTTACTATGAACCCAGCCTACA
GCACCGTTGGTGACTTTACCTTTGAGGCAGGTGCACAAGCGGTTCGTCAACTGCTCGCACTACCAGAGCAACCAACTGCT
ATCTTCTGTCACAATGACGCAATGGCTATTGGTGCGATTCAAGAGGCGAAGAAATTAGGATTACGCGTCCCACATGACCT
ATCGATTGTCGGCTTCGATGACATTCAATTCGCACAATATTGCGATCCACCGTTGACCACCATTTCTCAGCCTCGCTACG
AGATTGGACGCCAAGCAATGTTAATGATGCTTGATATGCTCAAAGGTAACGATGTTCAAGCGGGCTCTCGTCTGCTTGAG
GCGAAATTGGTCGTTCGTGGAAGTACGGCGCCACCCCGCCTTTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-329)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	89.458	99.401	0.889
cytR	Vibrio parahaemolyticus RIMD 2210633	86.787	99.701	0.865