Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   VDS57_RS18000 Genome accession   NZ_CP141839
Coordinates   3378926..3379204 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain PN1236     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3373926..3384204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS57_RS17980 (VDS57_17980) panEB 3375114..3376025 (+) 912 WP_137200747.1 ketopantoate reductase family protein -
  VDS57_RS17985 (VDS57_17985) ampS 3376059..3377291 (-) 1233 WP_003232341.1 aminopeptidase -
  VDS57_RS17990 (VDS57_17990) ykpC 3377400..3377534 (-) 135 WP_003238865.1 protein YkpC -
  VDS57_RS17995 (VDS57_17995) mreBH 3377635..3378642 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  VDS57_RS18000 (VDS57_18000) abrB 3378926..3379204 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  VDS57_RS18005 (VDS57_18005) kinC 3379394..3380680 (+) 1287 WP_121591764.1 two-component sensor histidine kinase KinC -
  VDS57_RS18010 (VDS57_18010) ykqA 3380696..3381523 (+) 828 WP_324271307.1 gamma-glutamylcyclotransferase -
  VDS57_RS18015 (VDS57_18015) ktrC 3381586..3382251 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  VDS57_RS18020 (VDS57_18020) ade 3382406..3384139 (+) 1734 WP_069837481.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=920179 VDS57_RS18000 WP_003244728.1 3378926..3379204(+) (abrB) [Bacillus subtilis strain PN1236]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=920179 VDS57_RS18000 WP_003244728.1 3378926..3379204(+) (abrB) [Bacillus subtilis strain PN1236]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTGGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576