Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   VDS57_RS17875 Genome accession   NZ_CP141839
Coordinates   3353559..3354134 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain PN1236     
Function   repression of comK (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 3349513..3355352 3353559..3354134 within 0


Gene organization within MGE regions


Location: 3349513..3355352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS57_RS17855 (VDS57_17855) - 3349513..3350865 (-) 1353 WP_014478984.1 IS1182 family transposase -
  VDS57_RS17860 (VDS57_17860) mscT 3350995..3351798 (-) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  VDS57_RS17865 (VDS57_17865) ahpA 3352035..3352577 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  VDS57_RS17870 (VDS57_17870) ykuV 3352647..3353093 (+) 447 WP_014479665.1 thiol-disulfide oxidoreductase YkuV -
  VDS57_RS17875 (VDS57_17875) rok 3353559..3354134 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=920178 VDS57_RS17875 WP_003232378.1 3353559..3354134(+) (rok) [Bacillus subtilis strain PN1236]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=920178 VDS57_RS17875 WP_003232378.1 3353559..3354134(+) (rok) [Bacillus subtilis strain PN1236]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1