Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   VDS57_RS17770 Genome accession   NZ_CP141839
Coordinates   3336132..3336596 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain PN1236     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3331132..3341596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS57_RS17750 (VDS57_17750) kinA 3331600..3333432 (+) 1833 WP_324271309.1 sporulation histidine kinase KinA -
  VDS57_RS17755 (VDS57_17755) dapX 3333429..3334610 (-) 1182 WP_014479654.1 aminotransferase A -
  VDS57_RS17760 (VDS57_17760) - 3334812..3334973 (-) 162 WP_003245246.1 hypothetical protein -
  VDS57_RS17765 (VDS57_17765) cheV 3335177..3336088 (+) 912 WP_014476655.1 chemotaxis protein CheV -
  VDS57_RS17770 (VDS57_17770) kre 3336132..3336596 (-) 465 WP_003232406.1 YkyB family protein Regulator
  VDS57_RS17775 (VDS57_17775) ykuC 3336722..3338014 (-) 1293 WP_014479656.1 MFS transporter -
  VDS57_RS17780 (VDS57_17780) ltdD 3338090..3338584 (-) 495 WP_072174092.1 L,D-transpeptidase family protein -
  VDS57_RS17785 (VDS57_17785) ppeE 3338641..3339501 (-) 861 WP_003232400.1 metallophosphoesterase -
  VDS57_RS17790 (VDS57_17790) fadH 3339644..3340408 (+) 765 WP_003232398.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=920177 VDS57_RS17770 WP_003232406.1 3336132..3336596(-) (kre) [Bacillus subtilis strain PN1236]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=920177 VDS57_RS17770 WP_003232406.1 3336132..3336596(-) (kre) [Bacillus subtilis strain PN1236]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1