Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   VDS57_RS15785 Genome accession   NZ_CP141839
Coordinates   2968515..2969093 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain PN1236     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2963515..2974093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS57_RS22215 - 2964035..2964550 (-) 516 WP_326255844.1 methyl-accepting chemotaxis protein -
  VDS57_RS22220 - 2964791..2965417 (-) 627 Protein_3035 protoglobin domain-containing protein -
  VDS57_RS15770 (VDS57_15770) comW 2965472..2967000 (-) 1529 Protein_3036 FAD-dependent oxidoreductase -
  VDS57_RS15775 (VDS57_15775) yhxC 2967104..2967961 (+) 858 WP_014479371.1 SDR family oxidoreductase -
  VDS57_RS15780 (VDS57_15780) yhzC 2967989..2968222 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  VDS57_RS15785 (VDS57_15785) comK 2968515..2969093 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  VDS57_RS15790 (VDS57_15790) yhxD 2969138..2970037 (-) 900 WP_014479372.1 SDR family oxidoreductase -
  VDS57_RS15795 (VDS57_15795) yhjA 2970254..2970523 (+) 270 WP_014479373.1 excalibur calcium-binding domain-containing protein -
  VDS57_RS15800 (VDS57_15800) yhjB 2970567..2972036 (-) 1470 WP_014479374.1 sodium:solute symporter family protein -
  VDS57_RS15805 (VDS57_15805) yhjC 2972033..2972233 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  VDS57_RS15810 (VDS57_15810) - 2972432..2972803 (-) 372 WP_014476361.1 hypothetical protein -
  VDS57_RS15815 (VDS57_15815) yhjE 2972955..2973578 (+) 624 WP_014479375.1 TVP38/TMEM64 family protein -
  VDS57_RS15820 (VDS57_15820) lepB 2973580..2974086 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=920165 VDS57_RS15785 WP_003245329.1 2968515..2969093(+) (comK) [Bacillus subtilis strain PN1236]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=920165 VDS57_RS15785 WP_003245329.1 2968515..2969093(+) (comK) [Bacillus subtilis strain PN1236]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATATGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAGTTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1