Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   VDS57_RS14560 Genome accession   NZ_CP141839
Coordinates   2749236..2750030 (+) Length   264 a.a.
NCBI ID   WP_014479217.1    Uniprot ID   -
Organism   Bacillus subtilis strain PN1236     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 2744236..2755030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS57_RS14530 (VDS57_14530) sxzA 2745075..2746106 (+) 1032 WP_003233568.1 FecCD family ABC transporter permease -
  VDS57_RS14535 (VDS57_14535) yfhB 2746221..2747102 (+) 882 WP_014479213.1 PhzF family phenazine biosynthesis isomerase -
  VDS57_RS14540 (VDS57_14540) yfhC 2747190..2747774 (+) 585 WP_032723010.1 nitroreductase family protein -
  VDS57_RS14545 (VDS57_14545) yfhD 2747813..2748004 (-) 192 WP_003233561.1 YfhD family protein -
  VDS57_RS14550 (VDS57_14550) yfhE 2748071..2748181 (-) 111 WP_003223230.1 YfhE family protein -
  VDS57_RS14555 (VDS57_14555) yfhF 2748236..2749147 (-) 912 WP_014479216.1 TIGR01777 family oxidoreductase -
  VDS57_RS14560 (VDS57_14560) recX 2749236..2750030 (+) 795 WP_014479217.1 recombination regulator RecX Regulator
  VDS57_RS14565 (VDS57_14565) yfhH 2750032..2750346 (+) 315 WP_003244592.1 YfhH family protein -
  VDS57_RS14570 (VDS57_14570) yfhI 2750489..2751682 (+) 1194 WP_003243500.1 MFS transporter -
  VDS57_RS14575 (VDS57_14575) sspK 2751714..2751866 (-) 153 WP_003223241.1 small, acid-soluble spore protein K -
  VDS57_RS14580 (VDS57_14580) yfhJ 2751991..2752260 (+) 270 WP_324271351.1 YfhJ family protein -
  VDS57_RS14585 (VDS57_14585) yfhK 2752405..2752923 (+) 519 WP_014479218.1 SH3 domain-containing protein -
  VDS57_RS14590 (VDS57_14590) spdL 2753008..2753340 (+) 333 WP_014479219.1 SdpC immunity protein SpdL -
  VDS57_RS14595 (VDS57_14595) ephM 2753327..2754187 (+) 861 WP_014479220.1 epoxide hydrolase EphM -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 31029.21 Da        Isoelectric Point: 6.6686

>NTDB_id=920161 VDS57_RS14560 WP_014479217.1 2749236..2750030(+) (recX) [Bacillus subtilis strain PN1236]
MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEV
EDHLKKKETSPPVIAEVIHRLNDYKYLNDQEFAAAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTRE
AVKHVEKLLKKDKKLSTKEFKQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAIK
VKQFLFRKGFSLDLIEQLLQEEEY

Nucleotide


Download         Length: 795 bp        

>NTDB_id=920161 VDS57_RS14560 WP_014479217.1 2749236..2750030(+) (recX) [Bacillus subtilis strain PN1236]
ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTTCAATATTTTTCTGGATGATAAATACGCCTT
CAGTGTGGACGCGGATGTGCTCGTGAAATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTGACATCATTGAGATTC
AATACGGCGATGAAGTGAAGAAAGGCTTCAACCGTGCGCTTGACTTTTTATCCTATCGAATGCGGTCGACGAAAGAGGTC
GAGGACCACTTAAAGAAAAAAGAAACCTCGCCCCCCGTCATTGCGGAAGTCATCCATAGGCTTAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCGCAGCCTATGTCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGATGTTTTGTTCAGAG
AGCTAAGAGCGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAGTTCCTTTTCCTTTGAAGATCAGACAAGAGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAGCTTTCGACGAAAGAATTCAAACAGCGCGCCCAGCTGCA
GCTTCAGCGCAAGGGCTTCTCATTTGATGTTATCAGCGCGGCGATGGATCAGATTGAATATGAAAATGATGAAGACACGG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTATGACGGCTCATATGAAAGCGCCATTAAG
GTCAAACAATTTTTATTCCGCAAAGGATTCTCACTCGATTTAATCGAGCAATTACTGCAGGAAGAGGAGTACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

99.242

100

0.992