Detailed information    

insolico Bioinformatically predicted

Overview


Name   comP   Type   Regulator
Locus tag   VDS57_RS04405 Genome accession   NZ_CP141839
Coordinates   806213..808525 (-) Length   770 a.a.
NCBI ID   WP_103330147.1    Uniprot ID   -
Organism   Bacillus subtilis strain PN1236     
Function   phosphorylation of ComA (predicted from homology)   
Competence regulation

Genomic Context


Location: 801213..813525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS57_RS04365 (VDS57_04365) mrpB 801680..802111 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  VDS57_RS04370 (VDS57_04370) mrpC 802111..802452 (+) 342 WP_014480700.1 Na(+)/H(+) antiporter subunit C -
  VDS57_RS04375 (VDS57_04375) mrpD 802445..803926 (+) 1482 WP_033881486.1 Na+/H+ antiporter subunit D -
  VDS57_RS04380 (VDS57_04380) mrpE 803932..804408 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  VDS57_RS04385 (VDS57_04385) mrpF 804408..804692 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  VDS57_RS04390 (VDS57_04390) mnhG 804676..805050 (+) 375 WP_324271460.1 monovalent cation/H(+) antiporter subunit G -
  VDS57_RS04395 (VDS57_04395) yuxO 805089..805469 (-) 381 WP_069837723.1 hotdog fold thioesterase -
  VDS57_RS04400 (VDS57_04400) comA 805488..806132 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  VDS57_RS04405 (VDS57_04405) comP 806213..808525 (-) 2313 WP_103330147.1 sensor histidine kinase Regulator
  VDS57_RS04410 (VDS57_04410) comX 808541..808762 (-) 222 WP_014480704.1 competence pheromone ComX -
  VDS57_RS04415 (VDS57_04415) - 808764..809627 (-) 864 WP_014480705.1 polyprenyl synthetase family protein -
  VDS57_RS04420 (VDS57_04420) degQ 809812..809952 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  VDS57_RS04425 (VDS57_04425) - 810174..810299 (+) 126 WP_003228793.1 hypothetical protein -
  VDS57_RS04430 (VDS57_04430) - 810414..810782 (+) 369 WP_046381300.1 hypothetical protein -
  VDS57_RS04435 (VDS57_04435) pdeH 810758..811987 (-) 1230 WP_046381301.1 cyclic di-GMP phosphodiesterase -

Sequence


Protein


Download         Length: 770 a.a.        Molecular weight: 89720.96 Da        Isoelectric Point: 8.2535

>NTDB_id=920132 VDS57_RS04405 WP_103330147.1 806213..808525(-) (comP) [Bacillus subtilis strain PN1236]
MYRYINVYKYLSLVFIILSFIYVIYLSYSFAFNIFVGADVKINEQGKLEVTNVLDYTDEYYSCVKKGDIILEVNGEKGSD
IQLKSGRLVNVESLIVERDNKSFHLQNVSLISEENLFMYLIPVISYSICLFCIFFIYRINKVRKSTSAYILILFLLFVSV
AYVSACGARRGEEISTYLLVLTLVSCPVLYIHFIYKYFIELGTKLFEKKILIIMYMLPLINLLLEDVLSNRLKSSAFLSN
LNLISFFVLVLTVSILIHKGIRKFKQKEQKSILKVLAYTNIFSFSPFIVFFAVPYVFFEKYVSPFSLAAFTLVIPFSLVY
QFMTNRLYNIDFVVGRLKYYGFLAITPTIIVVTIFNYIQQPKDIFYLVKLTIAIYVLMFAVFYFKEIIDFRFKLKRFTEK
FNYQDGIFKFTQLIKQASSVDQVLNHFKNTILEVLNIDNACVYDNSKGEITLLSKNNFKDLTYKNHEQYVKNFSGDIGKI
KEFKQGFIIKIGERGDRSFLVLCFSSYNTFKLTRDEIAWLQTLAFYTNVSLENVMKIEELMVHLEDLKQQESNPVWLKKL
MYTIEEKQRSDLARDLHDSVLQDLISLKRQCELFLGDFKKDENPCREEVQDKLVQMNEQMSDVISMTRETCHELRPQLLY
DLGLVKALSKLVAQQQERVPFHIRLNTGRFTASLDLDSQLNLYRIIQEFLSNAVKHSQATDVLIMLISIQNKIVLHYEDD
GVGFDQEKNTEHSMSMGLSGIKERVRALDGRLRIETSEGKGFKADIEIEL

Nucleotide


Download         Length: 2313 bp        

>NTDB_id=920132 VDS57_RS04405 WP_103330147.1 806213..808525(-) (comP) [Bacillus subtilis strain PN1236]
ATGTACAGATATATTAACGTCTATAAATATTTGTCTCTAGTTTTTATCATTTTAAGTTTTATTTATGTTATATACCTCTC
GTATAGCTTTGCTTTTAACATCTTCGTAGGTGCGGATGTAAAGATAAATGAACAGGGTAAGTTAGAGGTCACCAATGTTT
TAGATTATACAGATGAATATTATTCATGTGTGAAAAAGGGAGATATCATTCTTGAAGTAAATGGGGAGAAAGGCAGTGAT
ATTCAATTAAAAAGTGGAAGATTGGTCAATGTAGAAAGTTTAATTGTTGAGAGAGATAATAAATCATTTCATTTACAAAA
TGTAAGCCTAATCAGTGAAGAAAATTTATTTATGTATCTCATTCCTGTAATATCTTATTCAATCTGTTTATTTTGTATAT
TTTTTATTTATAGAATAAATAAAGTAAGAAAATCAACTTCTGCTTATATTTTAATTTTATTTTTGTTATTTGTATCAGTA
GCGTATGTAAGTGCATGTGGAGCAAGAAGAGGTGAAGAGATAAGCACTTATCTGCTTGTTCTTACTTTAGTCAGTTGTCC
GGTGTTATATATTCATTTTATATATAAATACTTTATAGAATTAGGAACAAAGTTATTCGAAAAGAAGATTTTAATCATTA
TGTATATGCTCCCGCTAATAAATCTTTTATTAGAGGACGTTCTGAGTAATAGATTAAAATCTTCGGCTTTTTTGTCTAAT
CTGAATTTGATTTCATTTTTTGTCCTAGTTCTTACTGTATCGATTCTTATCCATAAAGGGATAAGAAAATTTAAACAAAA
AGAGCAAAAGTCAATTTTGAAAGTCCTTGCTTATACAAATATCTTTTCTTTCAGTCCGTTTATTGTCTTTTTTGCTGTTC
CATATGTGTTTTTCGAGAAGTATGTCTCACCTTTTAGTTTGGCTGCTTTTACACTTGTTATACCTTTTTCTTTAGTATAT
CAATTTATGACTAATAGACTTTATAATATCGACTTTGTTGTGGGGCGGCTTAAGTACTACGGTTTTTTAGCCATTACACC
TACTATTATCGTAGTGACCATCTTTAATTACATTCAGCAACCAAAGGATATCTTTTATTTAGTTAAACTAACAATTGCAA
TATATGTTCTTATGTTTGCCGTTTTTTACTTTAAAGAAATCATTGATTTTCGTTTCAAGTTGAAAAGATTTACAGAGAAA
TTTAATTATCAAGATGGGATTTTTAAATTTACTCAGTTGATTAAGCAAGCATCATCAGTAGATCAAGTACTTAATCACTT
TAAAAATACAATCCTAGAAGTATTAAACATAGATAATGCTTGCGTGTATGATAATTCTAAAGGGGAAATCACCCTTCTTA
GTAAGAACAACTTTAAAGATCTGACTTATAAAAATCATGAGCAATATGTGAAAAATTTTTCTGGTGATATCGGTAAAATT
AAAGAGTTTAAACAAGGTTTTATTATTAAAATAGGTGAACGAGGAGACAGATCATTTTTAGTACTCTGTTTCTCAAGTTA
TAATACTTTTAAGTTAACAAGGGATGAAATTGCATGGCTTCAAACATTAGCATTTTATACAAATGTCTCATTGGAAAACG
TTATGAAAATCGAAGAATTGATGGTGCATCTTGAGGATTTAAAACAACAAGAATCCAACCCCGTATGGCTCAAAAAACTC
ATGTACACGATCGAGGAAAAACAACGCTCGGATCTCGCCCGCGATCTCCACGATTCCGTTCTTCAGGATTTGATTTCATT
AAAACGCCAGTGTGAGCTGTTTCTGGGTGATTTCAAGAAGGATGAAAATCCGTGCCGTGAAGAGGTGCAGGACAAGCTTG
TGCAGATGAATGAGCAGATGTCTGATGTGATTTCGATGACGAGGGAGACGTGTCATGAGCTGCGGCCGCAGCTTCTGTAT
GATCTTGGATTGGTGAAGGCGCTGTCGAAGCTGGTGGCGCAGCAGCAGGAGCGGGTTCCGTTTCATATCCGTTTAAATAC
CGGGAGATTTACGGCTTCCCTTGATCTGGATTCGCAGCTGAATTTGTACCGGATCATTCAAGAGTTTCTGTCTAATGCGG
TCAAGCACTCTCAGGCGACGGATGTGCTGATTATGCTCATCAGTATTCAAAACAAAATCGTTCTTCATTATGAGGATGAT
GGCGTAGGGTTTGATCAGGAAAAGAATACTGAGCATTCCATGAGCATGGGGCTTTCTGGCATTAAGGAGAGAGTCAGGGC
TTTAGATGGGCGCCTTCGGATTGAAACAAGTGAAGGAAAGGGCTTTAAGGCTGATATTGAAATCGAATTGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Bacillus subtilis subsp. subtilis str. 168

55.917

99.87

0.558