Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   VDS57_RS02150 Genome accession   NZ_CP141839
Coordinates   377362..378108 (-) Length   248 a.a.
NCBI ID   WP_072592551.1    Uniprot ID   -
Organism   Bacillus subtilis strain PN1236     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 372362..383108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS57_RS02120 (VDS57_02120) - 372690..373124 (+) 435 WP_041345303.1 helix-turn-helix domain-containing protein -
  VDS57_RS02125 (VDS57_02125) - 373138..373584 (+) 447 WP_324635468.1 ImmA/IrrE family metallo-endopeptidase -
  VDS57_RS02130 (VDS57_02130) - 373633..375051 (+) 1419 WP_324635578.1 recombinase family protein -
  VDS57_RS02135 (VDS57_02135) radC 375064..375471 (-) 408 Protein_422 RadC family protein -
  VDS57_RS02140 (VDS57_02140) maf 375508..376077 (-) 570 WP_014480456.1 Maf family nucleotide pyrophosphatase -
  VDS57_RS02145 (VDS57_02145) spoIIB 376230..377228 (-) 999 WP_014480457.1 stage II sporulation protein SpoIIB -
  VDS57_RS02150 (VDS57_02150) comC 377362..378108 (-) 747 WP_072592551.1 prepilin peptidase Machinery gene
  VDS57_RS02155 (VDS57_02155) folC 378248..379540 (-) 1293 WP_014480460.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  VDS57_RS02160 (VDS57_02160) valS 379600..382242 (-) 2643 WP_017697542.1 valine--tRNA ligase -
  VDS57_RS02165 (VDS57_02165) - 382690..382881 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=920126 VDS57_RS02150 WP_072592551.1 377362..378108(-) (comC) [Bacillus subtilis strain PN1236]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=920126 VDS57_RS02150 WP_072592551.1 377362..378108(-) (comC) [Bacillus subtilis strain PN1236]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGAGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGTATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996