Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OCV50_RS11885 Genome accession   NZ_AP025487
Coordinates   2735636..2736154 (-) Length   172 a.a.
NCBI ID   WP_032549766.1    Uniprot ID   A0A066URM7
Organism   Vibrio fortis strain LMG 21557     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2730636..2741154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV50_RS11865 rpsP 2731216..2731464 (-) 249 WP_004410028.1 30S ribosomal protein S16 -
  OCV50_RS11870 ffh 2731727..2733118 (-) 1392 WP_261903141.1 signal recognition particle protein -
  OCV50_RS11875 - 2733319..2734113 (+) 795 WP_239841213.1 inner membrane protein YpjD -
  OCV50_RS11880 - 2734240..2735529 (+) 1290 WP_239841214.1 HlyC/CorC family transporter -
  OCV50_RS11885 luxS 2735636..2736154 (-) 519 WP_032549766.1 S-ribosylhomocysteine lyase Regulator
  OCV50_RS11890 - 2736178..2736795 (-) 618 WP_261904161.1 hypothetical protein -
  OCV50_RS11895 gshA 2736837..2738405 (-) 1569 WP_261903142.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18959.78 Da        Isoelectric Point: 4.7373

>NTDB_id=92012 OCV50_RS11885 WP_032549766.1 2735636..2736154(-) (luxS) [Vibrio fortis strain LMG 21557]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRAHLNGEQVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLAAMADVLKVESQNKIPELNEYQCGTAAMHSLEEAKEIAKAILDAGISVNKNDELA
LPESMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=92012 OCV50_RS11885 WP_032549766.1 2735636..2736154(-) (luxS) [Vibrio fortis strain LMG 21557]
ATGCCTTTATTAGATAGTTTTACTGTGGATCACACACGCATGAATGCACCTGCGGTACGTGTGGCAAAAACCATGCAGAC
TCCTAAAGGAGATACGATCACAGTATTCGATTTACGTTTCACTGCACCCAATAAAGATATCCTGTCAGAGAAAGGAATTC
ACACTCTTGAGCACCTTTATGCTGGCTTCATGCGTGCACACCTAAATGGCGAGCAAGTTGAAATCATCGACATCTCTCCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCCTGATTGGTACACCTTCAGAGCAGCAAGTGGCTGATGCTTGGTTAGCGGC
AATGGCTGATGTGCTTAAAGTTGAGAGCCAAAACAAGATCCCTGAGCTGAATGAATACCAGTGTGGTACAGCAGCAATGC
ACTCACTAGAAGAAGCGAAAGAGATCGCGAAAGCCATTCTAGATGCAGGTATCTCAGTGAACAAAAATGATGAGCTAGCT
CTTCCGGAGTCTATGCTAAAAGAGCTTAAGGTCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066URM7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

90.058

99.419

0.895

Multiple sequence alignment