Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   VDS57_RS00530 Genome accession   NZ_CP141839
Coordinates   94568..94999 (-) Length   143 a.a.
NCBI ID   WP_324271586.1    Uniprot ID   -
Organism   Bacillus subtilis strain PN1236     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 89568..99999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS57_RS00480 (VDS57_00480) sinI 89763..89936 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  VDS57_RS00485 (VDS57_00485) sinR 89970..90305 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  VDS57_RS00490 (VDS57_00490) tasA 90398..91183 (-) 786 WP_014480250.1 biofilm matrix protein TasA -
  VDS57_RS00495 (VDS57_00495) sipW 91247..91819 (-) 573 WP_003230181.1 signal peptidase I SipW -
  VDS57_RS00500 (VDS57_00500) tapA 91803..92564 (-) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  VDS57_RS00505 (VDS57_00505) yqzG 92836..93162 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  VDS57_RS00510 (VDS57_00510) spoIITA 93204..93383 (-) 180 WP_014480252.1 YqzE family protein -
  VDS57_RS00515 (VDS57_00515) comGG 93462..93827 (-) 366 WP_324271587.1 ComG operon protein ComGG Machinery gene
  VDS57_RS00520 (VDS57_00520) comGF 93828..94211 (-) 384 WP_014480254.1 ComG operon protein ComGF Machinery gene
  VDS57_RS00525 (VDS57_00525) comGE 94237..94584 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  VDS57_RS00530 (VDS57_00530) comGD 94568..94999 (-) 432 WP_324271586.1 comG operon protein ComGD Machinery gene
  VDS57_RS00535 (VDS57_00535) comGC 94989..95285 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  VDS57_RS00540 (VDS57_00540) comGB 95299..96336 (-) 1038 WP_031600685.1 comG operon protein ComGB Machinery gene
  VDS57_RS00545 (VDS57_00545) comGA 96323..97393 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  VDS57_RS00550 (VDS57_00550) - 97605..97802 (-) 198 WP_014480259.1 CBS domain-containing protein -
  VDS57_RS00555 (VDS57_00555) corA 97804..98757 (-) 954 WP_014480260.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16109.78 Da        Isoelectric Point: 10.1947

>NTDB_id=920114 VDS57_RS00530 WP_324271586.1 94568..94999(-) (comGD) [Bacillus subtilis strain PN1236]
MNIKLNEEKGFTLLESLLVLSLASILLIAVFTTLPPAYDNTAVRQAARQLKNDIMLTQQTAISRQQRTKILFHKKEYQLV
IGDTVIERPYATGLSIELLTLKDRMEFNEKGHPNAGGKIRVKGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=920114 VDS57_RS00530 WP_324271586.1 94568..94999(-) (comGD) [Bacillus subtilis strain PN1236]
TTGAACATTAAATTAAACGAGGAGAAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GATTGCCGTCTTCACCACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGGCAGCTGAAAAATGATA
TTATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTCATTGAACGTCCGTATGCAACGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTATGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAAAGGCCATGCCGTTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

97.902

100

0.979