Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | VA212_RS07335 | Genome accession | NZ_CP141838 |
| Coordinates | 1509772..1510347 (+) | Length | 191 a.a. |
| NCBI ID | WP_324660380.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain P07928 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1504772..1515347
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VA212_RS07310 | uvrD | 1505461..1507506 (+) | 2046 | WP_324660376.1 | DNA helicase UvrD | - |
| VA212_RS07315 | flgA | 1507503..1508159 (+) | 657 | WP_324660377.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| VA212_RS07320 | - | 1508169..1508732 (+) | 564 | WP_000780123.1 | UbiX family flavin prenyltransferase | - |
| VA212_RS07325 | coaD | 1508732..1509205 (+) | 474 | WP_001169274.1 | pantetheine-phosphate adenylyltransferase | - |
| VA212_RS07330 | tmk | 1509209..1509784 (+) | 576 | WP_096424346.1 | dTMP kinase | - |
| VA212_RS07335 | comFC | 1509772..1510347 (+) | 576 | WP_324660380.1 | ComF family protein | Machinery gene |
| VA212_RS07340 | - | 1510380..1512419 (+) | 2040 | WP_324660381.1 | class I SAM-dependent DNA methyltransferase | - |
| VA212_RS07345 | - | 1512416..1513051 (+) | 636 | WP_324660383.1 | restriction endonuclease subunit S | - |
| VA212_RS07350 | - | 1513078..1513620 (+) | 543 | WP_324660384.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21370.99 Da Isoelectric Point: 9.2795
>NTDB_id=920106 VA212_RS07335 WP_324660380.1 1509772..1510347(+) (comFC) [Helicobacter pylori strain P07928]
MRCLTCLKLSFKPLCSNCLNDLPLILRVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGKEFVKILKEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRANNAVSYAGKSLEFRANNPRDFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKTLNTKVHFAIALCSADE
MRCLTCLKLSFKPLCSNCLNDLPLILRVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGKEFVKILKEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRANNAVSYAGKSLEFRANNPRDFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKTLNTKVHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=920106 VA212_RS07335 WP_324660380.1 1509772..1510347(+) (comFC) [Helicobacter pylori strain P07928]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGTTCAAATTGCTTGAACGATTTGCCCCTAATCTTAAG
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCAAAGAATTTGTGAAAATCCTAAAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGAAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAAGTTTAGATTATTTCTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACACAAAAGTGCATTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGTTCAAATTGCTTGAACGATTTGCCCCTAATCTTAAG
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCAAAGAATTTGTGAAAATCCTAAAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGAAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAAGTTTAGATTATTTCTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACACAAAAGTGCATTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
94.241 |
100 |
0.942 |