Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   VA212_RS06575 Genome accession   NZ_CP141838
Coordinates   1354774..1355055 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain P07928     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1349774..1360055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA212_RS06555 - 1350486..1351916 (-) 1431 WP_162972184.1 COG3014 family protein -
  VA212_RS06565 comB4 1352146..1354509 (-) 2364 WP_324660206.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  VA212_RS06570 comB3 1354511..1354774 (-) 264 WP_000584953.1 hypothetical protein Machinery gene
  VA212_RS06575 comB2 1354774..1355055 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  VA212_RS06580 - 1355200..1356027 (-) 828 WP_324660219.1 DUF5718 family protein -
  VA212_RS06585 - 1356116..1357168 (-) 1053 WP_180664449.1 7-cyano-7-deazaguanine synthase -
  VA212_RS06590 dnaG 1357165..1358844 (-) 1680 WP_324660220.1 DNA primase -
  VA212_RS06595 groES 1359116..1359472 (+) 357 WP_000671953.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=920104 VA212_RS06575 WP_001272686.1 1354774..1355055(-) (comB2) [Helicobacter pylori strain P07928]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=920104 VA212_RS06575 WP_001272686.1 1354774..1355055(-) (comB2) [Helicobacter pylori strain P07928]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTCTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989