Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   VA212_RS06570 Genome accession   NZ_CP141838
Coordinates   1354511..1354774 (-) Length   87 a.a.
NCBI ID   WP_000584953.1    Uniprot ID   A0AAV3IGW5
Organism   Helicobacter pylori strain P07928     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1349511..1359774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA212_RS06555 - 1350486..1351916 (-) 1431 WP_162972184.1 COG3014 family protein -
  VA212_RS06565 comB4 1352146..1354509 (-) 2364 WP_324660206.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  VA212_RS06570 comB3 1354511..1354774 (-) 264 WP_000584953.1 hypothetical protein Machinery gene
  VA212_RS06575 comB2 1354774..1355055 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  VA212_RS06580 - 1355200..1356027 (-) 828 WP_324660219.1 DUF5718 family protein -
  VA212_RS06585 - 1356116..1357168 (-) 1053 WP_180664449.1 7-cyano-7-deazaguanine synthase -
  VA212_RS06590 dnaG 1357165..1358844 (-) 1680 WP_324660220.1 DNA primase -
  VA212_RS06595 groES 1359116..1359472 (+) 357 WP_000671953.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10020.11 Da        Isoelectric Point: 9.5290

>NTDB_id=920103 VA212_RS06570 WP_000584953.1 1354511..1354774(-) (comB3) [Helicobacter pylori strain P07928]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=920103 VA212_RS06570 WP_000584953.1 1354511..1354774(-) (comB3) [Helicobacter pylori strain P07928]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCCAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

98.851

100

0.989