Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OCV50_RS09550 Genome accession   NZ_AP025487
Coordinates   2211449..2212849 (-) Length   466 a.a.
NCBI ID   WP_239841452.1    Uniprot ID   -
Organism   Vibrio fortis strain LMG 21557     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2206449..2217849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV50_RS09515 moaE 2207037..2207492 (-) 456 WP_261902898.1 molybdopterin synthase catalytic subunit MoaE -
  OCV50_RS09520 moaD 2207495..2207740 (-) 246 WP_239841458.1 molybdopterin synthase sulfur carrier subunit -
  OCV50_RS09525 moaC 2207740..2208216 (-) 477 WP_239841457.1 cyclic pyranopterin monophosphate synthase MoaC -
  OCV50_RS09530 moaB 2208227..2208739 (-) 513 WP_239841456.1 molybdenum cofactor biosynthesis protein B -
  OCV50_RS09535 moaA 2208828..2209817 (-) 990 WP_261902899.1 GTP 3',8-cyclase MoaA -
  OCV50_RS09540 - 2210155..2211042 (+) 888 WP_239841454.1 YvcK family protein -
  OCV50_RS09545 luxU 2211094..2211429 (-) 336 WP_239841453.1 quorum-sensing phosphorelay protein LuxU -
  OCV50_RS09550 luxO 2211449..2212849 (-) 1401 WP_239841452.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  OCV50_RS09555 uvrB 2213119..2215149 (-) 2031 WP_239841451.1 excinuclease ABC subunit UvrB -
  OCV50_RS09565 rsxA 2216015..2216593 (+) 579 WP_032551997.1 electron transport complex subunit RsxA -
  OCV50_RS09570 rsxB 2216596..2217180 (+) 585 WP_261902900.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 51987.42 Da        Isoelectric Point: 5.7560

>NTDB_id=92005 OCV50_RS09550 WP_239841452.1 2211449..2212849(-) (luxO) [Vibrio fortis strain LMG 21557]
MQSQTFDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGKEAIESLNHRIPDLILLDLRLPDMTGMDVLFAVKQNF
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSAEHPGSQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAVHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSVEEGKAFVRFSQEVIDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEITLGMLPPPLNQPLENSL
RLKEKQSEDITVKDIFPLWLTEKTAIEQAIKACDGNIPRAAGFLDVSPSTIYRKLQAWNAKQSSSE

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=92005 OCV50_RS09550 WP_239841452.1 2211449..2212849(-) (luxO) [Vibrio fortis strain LMG 21557]
ATGCAATCACAAACATTTGATAACAAATCTAAATATTTGTTAATGGTGGAAGATACGGCGTCAGTCGCGGCGTTATATCG
ATCTTACCTGACCCCGTTAGAGATAGATATCAATATCGTAGGGACGGGTAAAGAGGCAATCGAGAGCCTAAATCACCGAA
TCCCAGACCTCATTCTACTTGATCTTCGTCTTCCTGATATGACGGGGATGGATGTCCTTTTTGCGGTAAAGCAGAACTTT
CCTGAAGTCCCTGTCATTTTCATGACGGCTCACGGCTCAATTGATACTGCAGTTGAAGCAATGCGTCACGGCTCTCAAGA
CTTTTTGATTAAGCCTTGTGAAGCTGACCGTCTGCGTATCACGGTTAATAATGCGATTCGTAAAGCAACTAAGCTGAAGA
ACAGCGCTGAGCATCCGGGCAGTCAGAATTACCAAGGTTTCATCGGCAGTAGCCAAACCATGCAGCAGGTATATCGCACT
ATTGATTCAGCCGCTTCAAGTAAAGCCAGTATCTTTATTACTGGCGAAAGTGGTACCGGTAAAGAGGTGTGTGCTGAAGC
CGTTCACGCTGCGAGTAAGCGAGGCGATAAACCGTTTATTGCGATTAACTGTGCTGCGATTCCTAAAGATCTCATTGAGA
GTGAGCTATTTGGTCACGTTAAAGGTGCGTTTACGGGCGCTGCGACCGACCGACAAGGTGCTGCAGAGCTAGCGGATGGC
GGCACTCTGTTCCTCGATGAGCTTTGTGAAATGGACTTGGAGCTTCAAACCAAGCTGCTTCGTTTCATTCAAACGGGTAC
ATTCCAAAAAGTGGGTTCTTCAAAGATGAAGAGTGTGGATGTGCGCTTTGTGTGCGCGACCAACAGAGACCCATGGAAAG
AAGTGCAAGAAGGGCGCTTCCGTGAAGATTTGTACTACCGTTTATATGTTATCCCATTGCATCTTCCGCCTTTACGAGAA
CGTGGTGAAGATGTGATTGAGATTGCTTACTCCTTACTTGGTTATATGTCAGTGGAAGAAGGAAAAGCGTTTGTTCGTTT
TTCTCAAGAAGTTATTGATCGATTTAATCAGTATGAGTGGCCGGGTAATGTTCGACAGTTGCAGAATGTTTTGCGAAATG
TTGTGGTACTCAACAACGGTAAAGAGATCACGCTCGGTATGTTGCCACCACCGCTCAATCAACCGTTGGAAAACAGCCTA
AGATTGAAAGAAAAACAGAGTGAAGACATAACGGTTAAAGATATTTTTCCACTATGGCTCACTGAAAAAACAGCGATAGA
ACAAGCAATTAAGGCATGTGATGGTAATATTCCGAGAGCTGCAGGCTTTTTGGATGTGAGTCCATCGACAATTTATCGCA
AGTTACAGGCATGGAATGCAAAACAATCATCCTCAGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

85.045

96.137

0.818

Multiple sequence alignment