Detailed information NTG0092002

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: OCV50_RS07735
• Genome accession: NZ_AP025487
• Coordinates: 1793338..1794762 (+)
• Length: 474 a.a.
• NCBI ID: WP_261902676.1
• Uniprot ID: -
• Organism: Vibrio fortis strain LMG 21557
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1788338..1799762

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCV50_RS07715	-	1789301..1789822 (-)	522	WP_239842030.1	DUF2058 domain-containing protein	-
OCV50_RS07720	-	1789931..1790992 (-)	1062	WP_261902673.1	AraC family transcriptional regulator	-
OCV50_RS07725	-	1791189..1792226 (+)	1038	WP_261902674.1	DUF2804 domain-containing protein	-
OCV50_RS07730	-	1792291..1793139 (+)	849	WP_261902675.1	sterol desaturase family protein	-
OCV50_RS07735	sbcB	1793338..1794762 (+)	1425	WP_261902676.1	exodeoxyribonuclease I	Machinery gene
OCV50_RS07740	-	1794809..1795180 (+)	372	WP_261902677.1	CidA/LrgA family protein	-
OCV50_RS07745	-	1795182..1795859 (+)	678	WP_239842037.1	CidB/LrgB family autolysis modulator	-
OCV50_RS07750	cdd	1796196..1797083 (+)	888	WP_239842038.1	cytidine deaminase	-
OCV50_RS07755	purT	1797252..1798427 (+)	1176	WP_261902678.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
OCV50_RS07760	-	1798539..1799192 (-)	654	WP_261902679.1	thiopurine S-methyltransferase	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54540.75 Da
• Isoelectric Point: 4.7676

>NTDB_id=92002 OCV50_RS07735 WP_261902676.1 1793338..1794762(+) (sbcB) [Vibrio fortis strain LMG 21557]
MSSDNQPTYFFFDYETWGTSPAKDRPSQFAGVRTDQDFNIIGEPLVIYCQPPADYLPAPEAALITRITPQKAMSQGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPDGIVWPENEEGFP
SFKLEHLSVANGIEHENAHDAMADVVATIELAKKIKAAQPKMFDYLYNMRHKRKLNELVDIVNMTPLMHVSGMLGKECNY
TSWIVPMAWHPTNQNAVIVVDLAKDPSPLLELDTDALRERLYTKHSELGPDELPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLANLALLREHPEIREKLIGLYSVEREYEKDNDVDTQLYDGFFSPSDKAAMDIIRQTEPNNLAALDISFADE
RIEPLLFRYKARHYPWTLDESEQQKWANHCREFYESRLEDYMLNLENLAHEHENDEKKMAILKAVYQYVEKLAS

Nucleotide

• Length: 1425 bp

>NTDB_id=92002 OCV50_RS07735 WP_261902676.1 1793338..1794762(+) (sbcB) [Vibrio fortis strain LMG 21557]
ATGAGCTCAGATAATCAGCCGACCTATTTCTTCTTCGACTACGAAACTTGGGGTACGAGCCCAGCTAAAGATCGACCAAG
TCAATTTGCGGGTGTCCGCACCGACCAAGATTTCAACATCATTGGTGAGCCACTGGTCATCTATTGCCAACCACCCGCTG
ATTATCTACCTGCACCTGAAGCTGCATTAATCACACGAATCACGCCACAAAAAGCGATGTCACAAGGTCTACCTGAGCCA
GAGTTTATCGCGAAGATTCACGCTGAGTTATCTAAACCAAATACCACTAGCCTTGGTTACAACAGCATTCGTTTCGATGA
TGAAGTGACACGTTATACCTGTTACCGAAACTTCATTGATCCGTATGCATGGAGCTGGCAGAACGGCAACTCTCGCTGGG
ACCTATTGGATGTCATGCGTGCTGTCCATGCATTACGTCCAGATGGCATTGTTTGGCCAGAAAATGAAGAAGGATTCCCG
AGCTTTAAGTTAGAGCACCTGTCTGTGGCTAACGGTATCGAACACGAAAATGCCCACGATGCGATGGCTGACGTAGTTGC
CACCATTGAACTGGCGAAAAAGATCAAAGCTGCACAACCGAAAATGTTCGACTACTTGTACAACATGCGCCACAAACGCA
AGCTCAACGAGCTGGTCGACATCGTAAACATGACACCACTGATGCACGTTTCGGGCATGCTTGGTAAAGAGTGCAACTAC
ACCAGTTGGATTGTGCCAATGGCTTGGCACCCGACCAATCAAAATGCAGTTATCGTGGTCGACCTAGCGAAAGATCCAAG
CCCTCTGCTTGAGTTAGATACAGACGCGTTACGTGAAAGGCTTTATACCAAACACAGCGAACTAGGCCCTGATGAACTAC
CAGTGCCGATCAAGCTGGTACAACTCAACAAGTGCCCGATTCTCGCGCCTGCGAAAACACTCACAGCCGAGAATGCAGAG
ACTATTGGTATTGACCGTCAGCAATGTCTAGCCAACTTAGCGCTTCTTCGTGAGCATCCAGAGATCCGTGAAAAACTCAT
CGGGCTTTATTCGGTAGAACGTGAGTATGAAAAAGACAACGACGTCGATACTCAATTGTACGATGGTTTCTTCTCGCCTT
CTGACAAAGCGGCGATGGACATCATTCGCCAAACAGAGCCAAACAATCTTGCGGCTCTAGATATTAGTTTTGCTGACGAA
CGTATTGAACCTCTACTATTCAGGTATAAAGCGCGCCACTATCCTTGGACGCTTGATGAATCAGAACAGCAAAAATGGGC
CAATCACTGCCGTGAGTTTTACGAAAGTCGACTTGAAGATTACATGCTTAACCTTGAGAATCTTGCTCATGAGCATGAAA
ACGACGAGAAGAAGATGGCGATACTGAAAGCCGTATATCAATACGTAGAGAAGTTGGCTAGCTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-191)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	77.801	99.789	0.776