Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   VO178_RS01050 Genome accession   NZ_CP141829
Coordinates   222274..223224 (-) Length   316 a.a.
NCBI ID   WP_036121145.1    Uniprot ID   -
Organism   Lysinibacillus fusiformis strain TZA38     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 217274..228224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO178_RS01020 (VO178_01020) - 217284..218186 (-) 903 WP_324729278.1 polyprenyl synthetase family protein -
  VO178_RS01025 (VO178_01025) - 218525..219064 (+) 540 WP_036223428.1 hypothetical protein -
  VO178_RS01030 (VO178_01030) - 219168..219482 (-) 315 WP_008175171.1 antibiotic biosynthesis monooxygenase family protein -
  VO178_RS01035 (VO178_01035) - 219484..220503 (-) 1020 WP_324729279.1 siderophore ABC transporter substrate-binding protein -
  VO178_RS01040 (VO178_01040) - 220570..221331 (-) 762 WP_008175175.1 ABC transporter ATP-binding protein -
  VO178_RS01045 (VO178_01045) - 221328..222281 (-) 954 WP_008175176.1 iron chelate uptake ABC transporter family permease subunit -
  VO178_RS01050 (VO178_01050) ceuB 222274..223224 (-) 951 WP_036121145.1 ABC transporter permease Machinery gene
  VO178_RS01055 (VO178_01055) - 223510..224562 (-) 1053 WP_036121147.1 membrane protein -
  VO178_RS01060 (VO178_01060) menC 224604..225713 (-) 1110 WP_324729282.1 o-succinylbenzoate synthase -
  VO178_RS01065 (VO178_01065) - 225735..226559 (-) 825 WP_036223438.1 GNAT family N-acetyltransferase -
  VO178_RS01070 (VO178_01070) - 226559..227704 (-) 1146 WP_036121158.1 M20 peptidase aminoacylase family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34731.91 Da        Isoelectric Point: 10.1462

>NTDB_id=920006 VO178_RS01050 WP_036121145.1 222274..223224(-) (ceuB) [Lysinibacillus fusiformis strain TZA38]
MKIRYLLTATVVLSIVSLFIGVVDIKPSDLLDFQSEETRLFLISRVPRLVAILLAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDATRLGVLISMMFFSNVTYFQKISFAFIFALAGTLLFMQILNRIKFKDAIFIPLIGLMYGNILSSVTTFFAYKANII
QNISAWLQGDFSLIMKGRYELLYISVPVLILAYIYANRFTVAGMGEDFAKNLGLSYKLVVNLGLVLVALISTTVVLTVGV
IPFLGLIIPNIISLFKGDNLAKTLPHTALLGMSFLLFCDILGRVLIFPYEIPISMTVGVIGSAIFLVMLFRGRAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=920006 VO178_RS01050 WP_036121145.1 222274..223224(-) (ceuB) [Lysinibacillus fusiformis strain TZA38]
ATGAAAATAAGATATCTTTTAACAGCAACTGTTGTGTTGTCTATAGTATCGCTATTTATCGGAGTAGTAGATATTAAACC
AAGTGATCTATTAGACTTCCAATCAGAAGAAACTAGACTATTTTTAATTAGTCGTGTACCTAGACTTGTTGCTATTTTGC
TAGCAGGTGCAGGTATGAGTATTGCTGGTTTAATTATGCAAAGCTTAAGTAGGAATAAGTTCGTATCACCAACGACAGCA
GGTACTTTAGATGCCACTCGACTGGGTGTATTGATTTCCATGATGTTTTTCTCAAATGTCACGTATTTCCAAAAAATTTC
CTTCGCTTTCATATTTGCTTTAGCCGGCACATTATTATTTATGCAAATATTAAATCGAATTAAGTTTAAAGATGCGATTT
TTATACCGCTTATTGGCTTAATGTATGGTAATATCCTGTCTTCCGTAACAACGTTCTTTGCTTATAAGGCAAATATTATC
CAAAACATTTCTGCATGGTTACAAGGAGATTTCTCATTAATCATGAAAGGCCGTTATGAACTGTTATACATAAGTGTACC
AGTACTTATTTTAGCTTATATTTATGCCAATCGTTTTACAGTAGCTGGTATGGGTGAGGATTTTGCTAAAAATCTTGGTC
TATCCTATAAGCTTGTGGTGAATTTAGGCTTAGTATTGGTGGCTCTTATCTCCACAACAGTGGTGCTAACAGTCGGTGTC
ATTCCATTCCTTGGCTTGATCATACCGAACATTATTTCACTGTTTAAAGGTGATAATTTGGCAAAAACATTGCCGCATAC
AGCATTACTTGGTATGTCATTCTTATTATTCTGCGATATTTTAGGACGCGTACTGATTTTCCCTTATGAGATACCAATTA
GTATGACTGTTGGTGTAATTGGAAGTGCCATCTTCCTAGTCATGTTGTTTAGGGGGAGAGCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.215

100

0.522