Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   VO177_RS19910 Genome accession   NZ_CP141828
Coordinates   3972914..3973492 (-) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus velezensis strain TZS01     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3967914..3978492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO177_RS19875 (VO177_19875) - 3968105..3969574 (+) 1470 WP_021494946.1 sodium:solute symporter -
  VO177_RS19880 (VO177_19880) - 3969616..3969933 (+) 318 WP_003155166.1 YbjQ family protein -
  VO177_RS19885 (VO177_19885) - 3969966..3970235 (-) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  VO177_RS19890 (VO177_19890) - 3970431..3971141 (+) 711 WP_029973179.1 YrpD family protein -
  VO177_RS19895 (VO177_19895) - 3971370..3971879 (-) 510 WP_182072533.1 MepB family protein -
  VO177_RS19900 (VO177_19900) - 3972002..3972373 (-) 372 WP_110124619.1 iron chaperone -
  VO177_RS19905 (VO177_19905) - 3972400..3972768 (-) 369 WP_022553588.1 iron chaperone -
  VO177_RS19910 (VO177_19910) comK 3972914..3973492 (-) 579 WP_003155179.1 competence protein ComK Regulator
  VO177_RS19915 (VO177_19915) - 3973808..3974041 (+) 234 WP_007610478.1 IDEAL domain-containing protein -
  VO177_RS19920 (VO177_19920) - 3974072..3974929 (-) 858 WP_007610477.1 SDR family oxidoreductase -
  VO177_RS19925 (VO177_19925) - 3975054..3976577 (+) 1524 WP_014417355.1 FAD-dependent oxidoreductase -
  VO177_RS21490 - 3976811..3977185 (+) 375 Protein_3889 protoglobin domain-containing protein -
  VO177_RS21495 - 3977195..3977992 (+) 798 WP_411377950.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=920000 VO177_RS19910 WP_003155179.1 3972914..3973492(-) (comK) [Bacillus velezensis strain TZS01]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=920000 VO177_RS19910 WP_003155179.1 3972914..3973492(-) (comK) [Bacillus velezensis strain TZS01]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCGCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGATACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGC
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAGGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G1BIW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823