Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   VO177_RS17945 Genome accession   NZ_CP141828
Coordinates   3614291..3614575 (-) Length   94 a.a.
NCBI ID   WP_014417633.1    Uniprot ID   I2C4H1
Organism   Bacillus velezensis strain TZS01     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3609291..3619575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO177_RS17925 (VO177_17925) ade 3609397..3611130 (-) 1734 WP_103526928.1 adenine deaminase -
  VO177_RS17930 (VO177_17930) ktrC 3611279..3611944 (-) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  VO177_RS17935 (VO177_17935) - 3611985..3612812 (-) 828 WP_014417635.1 gamma-glutamylcyclotransferase -
  VO177_RS17940 (VO177_17940) - 3612814..3614118 (-) 1305 WP_014417634.1 ATP-binding protein -
  VO177_RS17945 (VO177_17945) abrB 3614291..3614575 (-) 285 WP_014417633.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  VO177_RS17950 (VO177_17950) mreBH 3614846..3615853 (+) 1008 WP_014417632.1 cell shape-determining protein MreBH -
  VO177_RS17955 (VO177_17955) - 3615925..3616059 (+) 135 WP_003154559.1 protein YkpC -
  VO177_RS17960 (VO177_17960) - 3616160..3617392 (+) 1233 WP_007409644.1 aminopeptidase -
  VO177_RS17965 (VO177_17965) - 3617421..3618329 (-) 909 WP_021493748.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10516.38 Da        Isoelectric Point: 5.8979

>NTDB_id=919987 VO177_RS17945 WP_014417633.1 3614291..3614575(-) (abrB) [Bacillus velezensis strain TZS01]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKGRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=919987 VO177_RS17945 WP_014417633.1 3614291..3614575(-) (abrB) [Bacillus velezensis strain TZS01]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGGTAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C4H1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543