Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   VO177_RS06040 Genome accession   NZ_CP141828
Coordinates   1179260..1180405 (-) Length   381 a.a.
NCBI ID   WP_324659228.1    Uniprot ID   -
Organism   Bacillus velezensis strain TZS01     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1174260..1185405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO177_RS05995 (VO177_05995) speE 1174567..1175397 (+) 831 WP_003151052.1 spermidine synthase -
  VO177_RS06000 (VO177_06000) speB 1175457..1176329 (+) 873 WP_324659225.1 agmatinase -
  VO177_RS06005 (VO177_06005) - 1176486..1176704 (+) 219 WP_003151056.1 helix-turn-helix transcriptional regulator -
  VO177_RS06010 (VO177_06010) - 1177295..1177807 (-) 513 WP_031304384.1 stage II sporulation protein M -
  VO177_RS06015 (VO177_06015) - 1177851..1178132 (-) 282 WP_007407643.1 hypothetical protein -
  VO177_RS06020 (VO177_06020) - 1178319..1178504 (-) 186 WP_007407642.1 DUF4177 domain-containing protein -
  VO177_RS06025 (VO177_06025) - 1178539..1178742 (-) 204 WP_007407641.1 hypothetical protein -
  VO177_RS06030 (VO177_06030) - 1178756..1178959 (-) 204 WP_324659227.1 helix-turn-helix transcriptional regulator -
  VO177_RS06035 (VO177_06035) - 1179157..1179276 (-) 120 WP_021494790.1 PhrC/PhrF family phosphatase-inhibitory pheromone -
  VO177_RS06040 (VO177_06040) rapF 1179260..1180405 (-) 1146 WP_324659228.1 tetratricopeptide repeat protein Regulator
  VO177_RS06045 (VO177_06045) - 1180697..1181125 (+) 429 WP_014419128.1 DUF1934 domain-containing protein -
  VO177_RS06050 (VO177_06050) argS 1181122..1182792 (+) 1671 WP_014419127.1 arginine--tRNA ligase -
  VO177_RS06055 (VO177_06055) narK 1182927..1184117 (+) 1191 WP_007407632.1 nitrate transporter NarK -
  VO177_RS06060 (VO177_06060) - 1184215..1184931 (+) 717 WP_007407631.1 Crp/Fnr family transcriptional regulator -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45553.59 Da        Isoelectric Point: 4.5436

>NTDB_id=919945 VO177_RS06040 WP_324659228.1 1179260..1180405(-) (rapF) [Bacillus velezensis strain TZS01]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSELLADIDKKQAQLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNTAIARQYHDKGVSYAEEAEDSLYIVEYEFLESLYVGEPDEEAI
MECFDFLRDKLMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=919945 VO177_RS06040 WP_324659228.1 1179260..1180405(-) (rapF) [Bacillus velezensis strain TZS01]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGAGCTGCTCGCGGATATTGATAAAAAGCAGGCCCAGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAGCAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAAGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGACTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATACGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATAGTCGAGTATGAATTTTTAGAATCTTTATATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATTGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(189-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

77.953

100

0.78
  rapC Bacillus subtilis subsp. subtilis str. 168

57.105

99.738

0.57