Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   VO179_RS03935 Genome accession   NZ_CP141827
Coordinates   912459..913067 (+) Length   202 a.a.
NCBI ID   WP_031304205.1    Uniprot ID   -
Organism   Bacillus velezensis strain XHA14     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 907459..918067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO179_RS03895 (VO179_03895) - 908479..908985 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  VO179_RS03900 (VO179_03900) - 909124..909537 (+) 414 WP_017418017.1 Hsp20/alpha crystallin family protein -
  VO179_RS03905 (VO179_03905) - 909567..910034 (-) 468 WP_105937586.1 YppG family protein -
  VO179_RS03910 (VO179_03910) - 910221..910403 (+) 183 WP_003153532.1 YppF family protein -
  VO179_RS03915 (VO179_03915) - 910442..910810 (-) 369 WP_061862317.1 YppE family protein -
  VO179_RS03920 (VO179_03920) - 910856..911101 (-) 246 WP_014418233.1 DUF5446 family protein -
  VO179_RS03925 (VO179_03925) sspM 911307..911411 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  VO179_RS03930 (VO179_03930) - 911455..912417 (-) 963 WP_031304204.1 DUF2515 domain-containing protein -
  VO179_RS03935 (VO179_03935) recU 912459..913067 (+) 609 WP_031304205.1 Holliday junction resolvase RecU Machinery gene
  VO179_RS03940 (VO179_03940) - 913106..915889 (+) 2784 WP_324636761.1 PBP1A family penicillin-binding protein -
  VO179_RS03945 (VO179_03945) - 915967..916458 (-) 492 WP_061046661.1 YpoC family protein -
  VO179_RS03950 (VO179_03950) nth 916455..917114 (-) 660 WP_063094937.1 endonuclease III -
  VO179_RS03955 (VO179_03955) dnaD 917133..917831 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23652.73 Da        Isoelectric Point: 9.5778

>NTDB_id=919866 VO179_RS03935 WP_031304205.1 912459..913067(+) (recU) [Bacillus velezensis strain XHA14]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWDRKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=919866 VO179_RS03935 WP_031304205.1 912459..913067(+) (recU) [Bacillus velezensis strain XHA14]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAACATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGACAGAAAGGAG
AACAATGGCAGAAAATCGATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896