Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   VO179_RS02185 Genome accession   NZ_CP141827
Coordinates   539429..539863 (+) Length   144 a.a.
NCBI ID   WP_229041400.1    Uniprot ID   -
Organism   Bacillus velezensis strain XHA14     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 534429..544863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO179_RS02180 (VO179_02180) - 537929..539140 (-) 1212 WP_229041401.1 cytochrome P450 family protein -
  VO179_RS02185 (VO179_02185) nucA/comI 539429..539863 (+) 435 WP_229041400.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  VO179_RS02190 (VO179_02190) - 539923..540678 (+) 756 WP_003154084.1 YoaK family protein -
  VO179_RS02195 (VO179_02195) - 540712..541074 (-) 363 WP_324635836.1 hypothetical protein -
  VO179_RS02200 (VO179_02200) - 541267..542595 (-) 1329 WP_015417518.1 S8 family peptidase -
  VO179_RS02205 (VO179_02205) - 542774..543007 (+) 234 WP_015239897.1 hypothetical protein -
  VO179_RS02210 (VO179_02210) - 543263..543970 (+) 708 WP_007410381.1 poly-gamma-glutamate hydrolase family protein -
  VO179_RS02215 (VO179_02215) - 544030..544482 (+) 453 WP_039251441.1 OsmC family protein -
  VO179_RS02220 (VO179_02220) - 544496..544849 (-) 354 WP_007410379.1 DMT family transporter -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15495.39 Da        Isoelectric Point: 6.8606

>NTDB_id=919865 VO179_RS02185 WP_229041400.1 539429..539863(+) (nucA/comI) [Bacillus velezensis strain XHA14]
MNAFMKWAASLLLVISLQFGLTGAGIHSDSAAHAASRYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADVRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=919865 VO179_RS02185 WP_229041400.1 539429..539863(+) (nucA/comI) [Bacillus velezensis strain XHA14]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGTTCGGCCTTACGGGCGCCGGTATCCA
TTCGGACAGTGCTGCTCATGCCGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCGGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATCGGGGCGGAGCAGAGAATAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATGTCAGATATGTAACCCCGTCGGATAACCGCGGGGCCGGTTCGTGGGTTGGAAATCAAATGAGCGGATATT
CCGACGGCACGAGAGTATTATTTATCGTTCAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.258

86.111

0.493