Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   VO179_RS00560 Genome accession   NZ_CP141827
Coordinates   110555..111019 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain XHA14     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 105555..116019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO179_RS00540 (VO179_00540) - 106035..107855 (+) 1821 WP_094032395.1 PAS domain-containing protein -
  VO179_RS00545 (VO179_00545) - 107836..109049 (-) 1214 Protein_107 aminotransferase A -
  VO179_RS00550 (VO179_00550) - 109250..109411 (-) 162 WP_324635915.1 hypothetical protein -
  VO179_RS00555 (VO179_00555) cheV 109600..110511 (+) 912 WP_039251615.1 chemotaxis protein CheV -
  VO179_RS00560 (VO179_00560) kre 110555..111019 (-) 465 WP_003154622.1 YkyB family protein Regulator
  VO179_RS00565 (VO179_00565) - 111142..112434 (-) 1293 WP_015239757.1 MFS transporter -
  VO179_RS00570 (VO179_00570) - 112510..113004 (-) 495 WP_095284082.1 L,D-transpeptidase family protein -
  VO179_RS00575 (VO179_00575) - 113079..113942 (-) 864 WP_324635914.1 metallophosphoesterase -
  VO179_RS00580 (VO179_00580) fadH 114087..114851 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  VO179_RS00585 (VO179_00585) - 114965..115513 (+) 549 WP_040238195.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=919858 VO179_RS00560 WP_003154622.1 110555..111019(-) (kre) [Bacillus velezensis strain XHA14]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=919858 VO179_RS00560 WP_003154622.1 110555..111019(-) (kre) [Bacillus velezensis strain XHA14]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929