Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   VO180_RS19515 Genome accession   NZ_CP141826
Coordinates   4004738..4005028 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain XHA16     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3999738..4010028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO180_RS19500 (VO180_19500) - 3999959..4001284 (-) 1326 WP_324636177.1 ubiquitin-like domain-containing protein -
  VO180_RS19505 (VO180_19505) - 4001419..4002186 (-) 768 WP_053573817.1 TatD family hydrolase -
  VO180_RS19510 (VO180_19510) metG 4002263..4004254 (-) 1992 WP_020955208.1 methionine--tRNA ligase -
  VO180_RS19515 (VO180_19515) abrB 4004738..4005028 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  VO180_RS19520 (VO180_19520) rsmI 4005078..4005959 (-) 882 WP_060675320.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  VO180_RS19525 (VO180_19525) - 4005934..4006233 (-) 300 WP_060675321.1 GIY-YIG nuclease family protein -
  VO180_RS19530 (VO180_19530) - 4006220..4006963 (-) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  VO180_RS19535 (VO180_19535) yabA 4007024..4007383 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  VO180_RS19540 (VO180_19540) ricT 4007398..4008225 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  VO180_RS19545 (VO180_19545) holB 4008228..4009217 (-) 990 WP_031379324.1 DNA polymerase III subunit delta' -
  VO180_RS19550 (VO180_19550) - 4009229..4009669 (-) 441 WP_004264730.1 YaaR family protein -
  VO180_RS19555 (VO180_19555) darA 4009682..4010011 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=919855 VO180_RS19515 WP_169510469.1 4004738..4005028(+) (abrB) [Bacillus velezensis strain XHA16]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=919855 VO180_RS19515 WP_169510469.1 4004738..4005028(+) (abrB) [Bacillus velezensis strain XHA16]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979