Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   VO180_RS17950 Genome accession   NZ_CP141826
Coordinates   3678445..3678882 (+) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain XHA16     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3673445..3683882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO180_RS17935 (VO180_17935) - 3676304..3676666 (-) 363 WP_007409352.1 winged helix-turn-helix transcriptional regulator -
  VO180_RS17940 (VO180_17940) hxlA 3676898..3677533 (+) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  VO180_RS17945 (VO180_17945) hxlB 3677530..3678087 (+) 558 WP_014416874.1 6-phospho-3-hexuloisomerase -
  VO180_RS17950 (VO180_17950) nucA/comI 3678445..3678882 (+) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  VO180_RS17955 (VO180_17955) nin/comJ 3678903..3679301 (+) 399 WP_039252825.1 competence protein ComJ Regulator
  VO180_RS17960 (VO180_17960) - 3679342..3680778 (-) 1437 WP_324636140.1 glycoside hydrolase family 1 protein -
  VO180_RS17965 (VO180_17965) - 3680882..3681160 (-) 279 WP_263612330.1 YckD family protein -
  VO180_RS17970 (VO180_17970) - 3681278..3681712 (-) 435 WP_012116767.1 RDD family protein -
  VO180_RS17975 (VO180_17975) - 3681727..3682863 (-) 1137 WP_025284207.1 zinc-dependent alcohol dehydrogenase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=919850 VO180_RS17950 WP_003156588.1 3678445..3678882(+) (nucA/comI) [Bacillus velezensis strain XHA16]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=919850 VO180_RS17950 WP_003156588.1 3678445..3678882(+) (nucA/comI) [Bacillus velezensis strain XHA16]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGAGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACATCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641