Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   VO180_RS13920 Genome accession   NZ_CP141826
Coordinates   2882815..2883768 (-) Length   317 a.a.
NCBI ID   WP_015417205.1    Uniprot ID   -
Organism   Bacillus velezensis strain XHA16     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2877815..2888768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO180_RS13890 (VO180_13890) - 2877969..2878955 (-) 987 WP_025284553.1 ABC transporter ATP-binding protein -
  VO180_RS13895 (VO180_13895) - 2879129..2879914 (-) 786 WP_061046904.1 DUF2268 domain-containing protein -
  VO180_RS13900 (VO180_13900) fabF 2879997..2881235 (-) 1239 WP_015417206.1 beta-ketoacyl-ACP synthase II -
  VO180_RS13905 (VO180_13905) - 2881258..2882196 (-) 939 WP_007409122.1 beta-ketoacyl-ACP synthase III -
  VO180_RS13910 (VO180_13910) - 2882364..2882582 (+) 219 WP_007409123.1 hypothetical protein -
  VO180_RS13915 (VO180_13915) comZ 2882611..2882802 (-) 192 WP_047477800.1 ComZ family protein Regulator
  VO180_RS13920 (VO180_13920) med 2882815..2883768 (-) 954 WP_015417205.1 BMP family ABC transporter substrate-binding protein Regulator
  VO180_RS13925 (VO180_13925) - 2883858..2884424 (-) 567 WP_251248637.1 hypothetical protein -
  VO180_RS13930 (VO180_13930) - 2884507..2885241 (-) 735 WP_094032933.1 hypothetical protein -
  VO180_RS13935 (VO180_13935) - 2885502..2885687 (+) 186 WP_003155069.1 YjzD family protein -
  VO180_RS13940 (VO180_13940) - 2885724..2885903 (-) 180 WP_003155070.1 YjzC family protein -
  VO180_RS13945 (VO180_13945) argF 2885979..2886950 (-) 972 WP_039252015.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35328.96 Da        Isoelectric Point: 4.6686

>NTDB_id=919837 VO180_RS13920 WP_015417205.1 2882815..2883768(-) (med) [Bacillus velezensis strain XHA16]
MITRLVMIFSVLLLLSGCAQTPFKGKIEKVGMLFPDTISDLVWGTKGYKGLLAIQSEFNVDVYYKENIRSDEDILKAIDD
FHKKGVNLLYGHGNEYEEIFNMISKDYPDMEFVVANGTAKSDNVTSVHLMGEAMGFFGGMTAAHMSKTNEVGVIASFLWQ
PEVDGFIKGAKYEKPDITVNTEFTDHWDNGNEALHLYEKLKAEGTDVVYPAGDGYNVPVIQQIKKDGLYAIGYVAEQSNL
GKNTVLTSTVQNVDKAYTLIAEQYNKGSLKSGDHNFDFREGVVEMGTFSPLVDKAFQDKISDLVKTYNRTNELPSNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=919837 VO180_RS13920 WP_015417205.1 2882815..2883768(-) (med) [Bacillus velezensis strain XHA16]
TTGATCACCAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGCGGATGCGCACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGAATGCTTTTTCCCGATACCATCAGTGACTTGGTATGGGGCACAAAAGGTTACAAAGGTTTATTAGCGA
TACAATCTGAATTTAACGTTGACGTTTATTATAAAGAAAATATCAGATCCGATGAAGATATTTTAAAAGCGATAGATGAT
TTTCATAAAAAAGGAGTCAATCTTTTATACGGGCACGGAAATGAATACGAGGAAATCTTCAATATGATCAGCAAGGATTA
TCCCGACATGGAATTCGTCGTCGCAAACGGAACGGCGAAAAGCGATAATGTCACAAGCGTTCATCTTATGGGAGAAGCAA
TGGGTTTTTTCGGGGGAATGACAGCCGCCCATATGTCAAAAACCAATGAGGTCGGCGTCATCGCCTCCTTTTTGTGGCAG
CCTGAAGTAGACGGCTTTATCAAAGGGGCGAAATATGAAAAGCCTGATATCACCGTCAATACTGAATTTACGGACCACTG
GGATAACGGCAATGAAGCGCTGCATCTTTACGAGAAGTTAAAAGCGGAAGGCACGGATGTTGTATATCCGGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGGCTTTACGCCATCGGCTATGTCGCCGAACAATCGAATCTC
GGCAAAAACACGGTGCTGACAAGCACGGTGCAAAACGTAGATAAAGCCTATACATTAATTGCCGAGCAATATAATAAAGG
TTCGCTCAAGAGCGGAGATCACAACTTTGATTTCAGGGAAGGAGTCGTTGAAATGGGGACGTTCAGCCCTCTGGTGGACA
AAGCATTTCAAGACAAAATCTCAGACCTTGTAAAAACGTATAACCGAACAAATGAACTGCCGTCAAATGAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

78.233

100

0.782