Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   VO180_RS12515 Genome accession   NZ_CP141826
Coordinates   2627348..2627812 (+) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain XHA16     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2622348..2632812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO180_RS12490 (VO180_12490) - 2622854..2623402 (-) 549 WP_040238195.1 hypothetical protein -
  VO180_RS12495 (VO180_12495) fadH 2623516..2624280 (-) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  VO180_RS12500 (VO180_12500) - 2624425..2625288 (+) 864 WP_324635914.1 metallophosphoesterase -
  VO180_RS12505 (VO180_12505) - 2625363..2625857 (+) 495 WP_095284082.1 L,D-transpeptidase family protein -
  VO180_RS12510 (VO180_12510) - 2625933..2627225 (+) 1293 WP_015239757.1 MFS transporter -
  VO180_RS12515 (VO180_12515) kre 2627348..2627812 (+) 465 WP_003154622.1 YkyB family protein Regulator
  VO180_RS12520 (VO180_12520) cheV 2627856..2628767 (-) 912 WP_039251615.1 chemotaxis protein CheV -
  VO180_RS12525 (VO180_12525) - 2628956..2629117 (+) 162 WP_324635915.1 hypothetical protein -
  VO180_RS12530 (VO180_12530) - 2629318..2630531 (+) 1214 Protein_2467 aminotransferase A -
  VO180_RS12535 (VO180_12535) - 2630512..2632332 (-) 1821 WP_094032395.1 PAS domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=919829 VO180_RS12515 WP_003154622.1 2627348..2627812(+) (kre) [Bacillus velezensis strain XHA16]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=919829 VO180_RS12515 WP_003154622.1 2627348..2627812(+) (kre) [Bacillus velezensis strain XHA16]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929