Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   VO180_RS11460 Genome accession   NZ_CP141826
Coordinates   2376665..2377564 (-) Length   299 a.a.
NCBI ID   WP_033574575.1    Uniprot ID   -
Organism   Bacillus velezensis strain XHA16     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2371665..2382564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO180_RS11445 (VO180_11445) xerC 2372049..2372966 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  VO180_RS11450 (VO180_11450) trmFO 2373036..2374343 (-) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  VO180_RS11455 (VO180_11455) topA 2374408..2376483 (-) 2076 WP_007409771.1 type I DNA topoisomerase -
  VO180_RS11460 (VO180_11460) dprA 2376665..2377564 (-) 900 WP_033574575.1 DNA-processing protein DprA Machinery gene
  VO180_RS11465 (VO180_11465) sucD 2377630..2378532 (-) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  VO180_RS11470 (VO180_11470) sucC 2378561..2379718 (-) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  VO180_RS11475 (VO180_11475) - 2379893..2380174 (-) 282 WP_007409769.1 FlhB-like flagellar biosynthesis protein -
  VO180_RS11480 (VO180_11480) - 2380171..2381874 (-) 1704 WP_324635850.1 glycosyl transferase -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32894.16 Da        Isoelectric Point: 8.4593

>NTDB_id=919826 VO180_RS11460 WP_033574575.1 2376665..2377564(-) (dprA) [Bacillus velezensis strain XHA16]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTAPEAIFREIERKDPKLDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTLLLEKGRKIGIVGTRKPTEDGIKAVGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYMEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=919826 VO180_RS11460 WP_033574575.1 2376665..2377564(-) (dprA) [Bacillus velezensis strain XHA16]
TTGGATCAAGCATCGCGATGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCATTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGAAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCTGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATATGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.903

100

0.709
  dprA Lactococcus lactis subsp. cremoris KW2

41.667

88.294

0.368