Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   VO180_RS10890 Genome accession   NZ_CP141826
Coordinates   2198504..2198938 (-) Length   144 a.a.
NCBI ID   WP_229041400.1    Uniprot ID   -
Organism   Bacillus velezensis strain XHA16     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2193504..2203938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO180_RS10855 (VO180_10855) - 2193518..2193871 (+) 354 WP_007410379.1 DMT family transporter -
  VO180_RS10860 (VO180_10860) - 2193885..2194337 (-) 453 WP_039251441.1 OsmC family protein -
  VO180_RS10865 (VO180_10865) - 2194397..2195104 (-) 708 WP_007410381.1 poly-gamma-glutamate hydrolase family protein -
  VO180_RS10870 (VO180_10870) - 2195360..2195593 (-) 234 WP_015239897.1 hypothetical protein -
  VO180_RS10875 (VO180_10875) - 2195772..2197100 (+) 1329 WP_015417518.1 S8 family peptidase -
  VO180_RS10880 (VO180_10880) - 2197293..2197655 (+) 363 WP_324635836.1 hypothetical protein -
  VO180_RS10885 (VO180_10885) - 2197689..2198444 (-) 756 WP_003154084.1 YoaK family protein -
  VO180_RS10890 (VO180_10890) nucA/comI 2198504..2198938 (-) 435 WP_229041400.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  VO180_RS10895 (VO180_10895) - 2199227..2200438 (+) 1212 WP_229041401.1 cytochrome P450 family protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15495.39 Da        Isoelectric Point: 6.8606

>NTDB_id=919822 VO180_RS10890 WP_229041400.1 2198504..2198938(-) (nucA/comI) [Bacillus velezensis strain XHA16]
MNAFMKWAASLLLVISLQFGLTGAGIHSDSAAHAASRYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADVRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=919822 VO180_RS10890 WP_229041400.1 2198504..2198938(-) (nucA/comI) [Bacillus velezensis strain XHA16]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGTTCGGCCTTACGGGCGCCGGTATCCA
TTCGGACAGTGCTGCTCATGCCGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCGGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATCGGGGCGGAGCAGAGAATAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATGTCAGATATGTAACCCCGTCGGATAACCGCGGGGCCGGTTCGTGGGTTGGAAATCAAATGAGCGGATATT
CCGACGGCACGAGAGTATTATTTATCGTTCAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.258

86.111

0.493