Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   VO180_RS08075 Genome accession   NZ_CP141826
Coordinates   1580570..1581370 (+) Length   266 a.a.
NCBI ID   WP_324636725.1    Uniprot ID   -
Organism   Bacillus velezensis strain XHA16     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1575570..1586370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO180_RS08055 (VO180_08055) - 1575692..1576537 (+) 846 WP_007612503.1 TlyA family RNA methyltransferase -
  VO180_RS08060 (VO180_08060) ahrC 1576634..1577083 (+) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  VO180_RS08065 (VO180_08065) recN 1577115..1578845 (+) 1731 WP_015417799.1 DNA repair protein RecN Machinery gene
  VO180_RS08070 (VO180_08070) spoIVB 1579009..1580289 (+) 1281 WP_007408360.1 SpoIVB peptidase -
  VO180_RS08075 (VO180_08075) spo0A 1580570..1581370 (+) 801 WP_324636725.1 sporulation transcription factor Spo0A Regulator
  VO180_RS08080 (VO180_08080) alr 1581519..1582700 (-) 1182 WP_012117960.1 alanine racemase -
  VO180_RS08085 (VO180_08085) - 1582876..1583088 (-) 213 WP_003153181.1 spore germination protein -
  VO180_RS08090 (VO180_08090) - 1583214..1583426 (-) 213 WP_007408362.1 spore germination protein -
  VO180_RS08095 (VO180_08095) - 1583552..1584670 (-) 1119 WP_031378952.1 NADH-dependent flavin oxidoreductase -
  VO180_RS08100 (VO180_08100) - 1584764..1584901 (-) 138 WP_168768911.1 hypothetical protein -
  VO180_RS08105 (VO180_08105) - 1585198..1585830 (-) 633 WP_007408365.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29644.13 Da        Isoelectric Point: 6.1630

>NTDB_id=919820 VO180_RS08075 WP_324636725.1 1580570..1581370(+) (spo0A) [Bacillus velezensis strain XHA16]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNISSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=919820 VO180_RS08075 WP_324636725.1 1580570..1581370(+) (spo0A) [Bacillus velezensis strain XHA16]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGTCTTTCTTTGTTTAAAGATAAGAATCCAGATGTGCTCG
TTTTAGACATTATCATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGGGAATCAGAGCTCGAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCGTCCTATTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATTCGCCAGGTAAGCGGAAATATCAGCAGTGTCACACACCGTGCGC
CGTCTGCGCAAAGCAGCATTATCCGCAGCCAGCCTGAGCCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACTGCAAGCCGTGTAGAACGGG
CCATCCGCCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATTGATTCCATTTCTTCACTGTTCGGATATACGGTAAGC
ATGACAAAAGCAAAGCCAACCAACTCGGAATTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.97