Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   VO180_RS06660 Genome accession   NZ_CP141826
Coordinates   1331214..1331966 (+) Length   250 a.a.
NCBI ID   WP_012118107.1    Uniprot ID   A7Z796
Organism   Bacillus velezensis strain XHA16     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1326214..1336966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO180_RS06645 (VO180_06645) - 1326437..1326628 (-) 192 WP_003152639.1 hypothetical protein -
  VO180_RS06650 (VO180_06650) - 1327081..1329723 (+) 2643 WP_015417930.1 valine--tRNA ligase -
  VO180_RS06655 (VO180_06655) - 1329782..1331074 (+) 1293 WP_061860764.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  VO180_RS06660 (VO180_06660) comC 1331214..1331966 (+) 753 WP_012118107.1 prepilin peptidase Machinery gene
  VO180_RS06665 (VO180_06665) - 1332093..1333094 (+) 1002 WP_032866593.1 SPOR domain-containing protein -
  VO180_RS06670 (VO180_06670) - 1333235..1333804 (+) 570 WP_324636543.1 Maf family protein -
  VO180_RS06675 (VO180_06675) radC 1333836..1334531 (+) 696 WP_007408165.1 RadC family protein -
  VO180_RS06680 (VO180_06680) mreB 1334623..1335636 (+) 1014 WP_003152647.1 cell shape-determining protein MreB -
  VO180_RS06685 (VO180_06685) mreC 1335667..1336530 (+) 864 WP_007408166.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27219.94 Da        Isoelectric Point: 9.4293

>NTDB_id=919804 VO180_RS06660 WP_012118107.1 1331214..1331966(+) (comC) [Bacillus velezensis strain XHA16]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=919804 VO180_RS06660 WP_012118107.1 1331214..1331966(+) (comC) [Bacillus velezensis strain XHA16]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCTGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTCTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z796

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584