Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   VO180_RS01815 Genome accession   NZ_CP141826
Coordinates   359044..360189 (-) Length   381 a.a.
NCBI ID   WP_324636320.1    Uniprot ID   -
Organism   Bacillus velezensis strain XHA16     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 354044..365189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO180_RS01770 (VO180_01770) speE 354356..355186 (+) 831 WP_003151052.1 spermidine synthase -
  VO180_RS01775 (VO180_01775) speB 355245..356117 (+) 873 WP_007614448.1 agmatinase -
  VO180_RS01780 (VO180_01780) - 356270..356488 (+) 219 WP_003151056.1 helix-turn-helix transcriptional regulator -
  VO180_RS01785 (VO180_01785) - 357079..357591 (-) 513 WP_007614439.1 stage II sporulation protein M -
  VO180_RS01790 (VO180_01790) - 357635..357916 (-) 282 WP_007407643.1 hypothetical protein -
  VO180_RS01795 (VO180_01795) - 358103..358288 (-) 186 WP_007407642.1 DUF4177 domain-containing protein -
  VO180_RS01800 (VO180_01800) - 358323..358526 (-) 204 WP_007407641.1 hypothetical protein -
  VO180_RS01805 (VO180_01805) - 358540..358743 (-) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  VO180_RS01810 (VO180_01810) - 358941..359060 (-) 120 WP_021494790.1 PhrC/PhrF family phosphatase-inhibitory pheromone -
  VO180_RS01815 (VO180_01815) rapF 359044..360189 (-) 1146 WP_324636320.1 tetratricopeptide repeat protein Regulator
  VO180_RS01820 (VO180_01820) - 360481..360909 (+) 429 WP_014419128.1 DUF1934 domain-containing protein -
  VO180_RS01825 (VO180_01825) argS 360906..362576 (+) 1671 WP_324636321.1 arginine--tRNA ligase -
  VO180_RS01830 (VO180_01830) narK 362710..363900 (+) 1191 WP_007407632.1 nitrate transporter NarK -
  VO180_RS01835 (VO180_01835) - 363998..364714 (+) 717 WP_007407631.1 Crp/Fnr family transcriptional regulator -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45611.73 Da        Isoelectric Point: 4.5797

>NTDB_id=919787 VO180_RS01815 WP_324636320.1 359044..360189(-) (rapF) [Bacillus velezensis strain XHA16]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSELLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIVEYEFLESLYVGEPDEEAI
MECFDFLRDKLMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=919787 VO180_RS01815 WP_324636320.1 359044..360189(-) (rapF) [Bacillus velezensis strain XHA16]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGAGCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAGCAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAAGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGACTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATAGTCGAGTATGAATTTTTAGAATCTTTATATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATTGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(189-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

78.215

100

0.782
  rapC Bacillus subtilis subsp. subtilis str. 168

57.105

99.738

0.57