Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   VF946_RS08240 Genome accession   NZ_CP141824
Coordinates   1607651..1608454 (-) Length   267 a.a.
NCBI ID   WP_023369694.1    Uniprot ID   A0A822VJ97
Organism   Streptococcus suis strain HB18     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1602651..1613454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VF946_RS08220 - 1602986..1604032 (-) 1047 WP_023369700.1 D-alanine--D-alanine ligase -
  VF946_RS08225 recR 1604137..1604733 (-) 597 WP_002935848.1 recombination mediator RecR -
  VF946_RS08230 pbp2b 1604742..1606817 (-) 2076 WP_238716781.1 penicillin-binding protein PBP2B -
  VF946_RS08235 - 1606909..1607283 (-) 375 WP_023369696.1 ATP-binding cassette domain-containing protein -
  VF946_RS08240 vicX 1607651..1608454 (-) 804 WP_023369694.1 MBL fold metallo-hydrolase Regulator
  VF946_RS08245 micB 1608461..1609810 (-) 1350 WP_024405653.1 cell wall metabolism sensor histidine kinase VicK Regulator
  VF946_RS08250 micA 1609803..1610507 (-) 705 WP_002935840.1 response regulator YycF Regulator
  VF946_RS08255 - 1610701..1611462 (+) 762 WP_002935839.1 amino acid ABC transporter ATP-binding protein -
  VF946_RS08260 - 1611473..1612312 (+) 840 WP_023369690.1 transporter substrate-binding domain-containing protein -
  VF946_RS08265 - 1612327..1613025 (+) 699 WP_015646621.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29672.84 Da        Isoelectric Point: 6.1694

>NTDB_id=919764 VF946_RS08240 WP_023369694.1 1607651..1608454(-) (vicX) [Streptococcus suis strain HB18]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEINRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGKRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=919764 VF946_RS08240 WP_023369694.1 1607651..1608454(-) (vicX) [Streptococcus suis strain HB18]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTAGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTAGCGGAAATTAATCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGCATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGATCTAGATATTGAGTCATTTGGAGTTAGCCATGATGCTGCATGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCGAACCATGATATTGAAATTTTGCGCTCAGGTTCTTATTCATGGAATTTGAA
GCAACGGATTCTATCCGATAAGGGACATCTTTGTAACGAAGATGGAGCTGATGCCATGATTCGCTCGTTGGGAAAACGGA
CCAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAATAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAGTTG
GCGCAGGCTGATTTAGGTGTTGGAGTAGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACTAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A822VJ97

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.404

100

0.764