Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   VF946_RS02155 Genome accession   NZ_CP141824
Coordinates   422797..423846 (+) Length   349 a.a.
NCBI ID   WP_238716832.1    Uniprot ID   -
Organism   Streptococcus suis strain HB18     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 417797..428846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VF946_RS02120 - 418099..419193 (+) 1095 WP_024405572.1 sensor histidine kinase -
  VF946_RS02125 - 419190..419792 (+) 603 WP_024405571.1 response regulator transcription factor -
  VF946_RS02130 - 420100..420318 (+) 219 WP_024405570.1 YqgQ family protein -
  VF946_RS02135 - 420318..420704 (+) 387 WP_004194735.1 rhodanese-like domain-containing protein -
  VF946_RS02140 - 420761..421483 (+) 723 WP_024405569.1 hypothetical protein -
  VF946_RS02145 rsmD 421793..422332 (+) 540 WP_014638485.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  VF946_RS02150 coaD 422322..422810 (+) 489 WP_002939048.1 pantetheine-phosphate adenylyltransferase -
  VF946_RS02155 sepM 422797..423846 (+) 1050 WP_238716832.1 SepM family pheromone-processing serine protease Regulator
  VF946_RS02160 - 424034..424675 (+) 642 WP_024382386.1 YutD family protein -
  VF946_RS02165 rlmN 424684..425796 (+) 1113 WP_012028433.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  VF946_RS02170 - 425793..426320 (+) 528 WP_012027591.1 VanZ family protein -
  VF946_RS02175 nadE 427616..428440 (-) 825 WP_238716831.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37789.88 Da        Isoelectric Point: 4.6112

>NTDB_id=919748 VF946_RS02155 WP_238716832.1 422797..423846(+) (sepM) [Streptococcus suis strain HB18]
MKKNRKLTLIASIVLGTLLIWFAVFVRLPYYLESPGGAADIRQVLTVNNQIDQEDGSYNFTYVSVQQATALQLFAAQFDP
YTTVRSSEEMTGGADNEEYFRIARFYMETSQNMAKYQGLTLVGKEVNLDFFGVYVLALTDDSTFKKVLNIADTVVSINGK
TFESSPDLIKYVSGLEVGSDVTVGYISAGQEKSADGKIIKLSNGKNGIGITLVDHTEVQSSIPIDFQTGDIGGPSAGLMF
TLAIYTQLAEPDLRDGRIIAGTGTIEQDGKVGDIGGADKKVISAAKSGASIFFVPNNPVDVEVLKKNPKAKTNYEEAKEA
AEKAGLDIEVVPVKTVQEAIDYLKKTKGE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=919748 VF946_RS02155 WP_238716832.1 422797..423846(+) (sepM) [Streptococcus suis strain HB18]
ATGAAGAAAAATAGGAAGTTAACCTTAATTGCATCTATTGTTTTAGGAACTCTTTTGATTTGGTTTGCCGTTTTTGTTCG
TCTGCCTTATTATCTGGAAAGTCCAGGTGGAGCTGCCGATATTCGTCAGGTACTAACGGTGAACAATCAAATAGACCAAG
AGGATGGCTCTTACAACTTCACCTATGTATCAGTCCAACAGGCTACAGCTTTACAACTATTCGCTGCTCAGTTTGATCCC
TATACGACAGTTCGTTCCTCTGAAGAGATGACAGGAGGGGCCGACAATGAGGAGTATTTCCGTATAGCACGGTTTTACAT
GGAGACATCGCAAAATATGGCGAAGTACCAAGGTTTGACCTTGGTAGGAAAAGAAGTCAATCTTGATTTCTTTGGTGTCT
ATGTGCTTGCCTTGACGGATGATTCAACCTTTAAAAAAGTTCTTAATATTGCCGACACTGTTGTGAGTATCAATGGAAAA
ACATTTGAGTCTTCTCCTGATTTGATTAAATATGTGAGTGGCTTGGAGGTTGGAAGTGATGTAACAGTTGGTTATATTAG
CGCTGGTCAGGAAAAATCTGCGGACGGTAAGATTATCAAATTGTCTAATGGCAAAAACGGGATAGGTATCACTCTCGTAG
ATCATACAGAGGTTCAAAGTTCGATTCCGATTGATTTCCAAACAGGAGATATTGGTGGTCCAAGTGCTGGTCTGATGTTT
ACACTTGCCATCTATACTCAACTCGCAGAGCCTGACTTACGTGATGGTCGGATTATTGCTGGTACGGGGACTATCGAGCA
GGATGGAAAAGTAGGTGACATTGGTGGGGCTGATAAGAAGGTCATTTCGGCAGCTAAGTCTGGTGCAAGTATCTTTTTTG
TACCAAACAATCCAGTTGATGTAGAAGTTTTGAAGAAAAATCCAAAGGCTAAAACGAACTATGAAGAAGCTAAGGAAGCA
GCCGAGAAAGCAGGTCTAGATATTGAGGTAGTTCCTGTGAAAACTGTTCAAGAGGCTATTGATTATTTGAAGAAAACAAA
GGGCGAGTAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-315)

PDZ domain (PDZ_2)

(132-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

60.519

99.427

0.602