Detailed information NTG0919710

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: VER99_RS11800
• Genome accession: NZ_CP141822
• Coordinates: 2613601..2614587 (-)
• Length: 328 a.a.
• NCBI ID: WP_024372915.1
• Uniprot ID: -
• Organism: Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2608601..2619587

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VER99_RS11785 (VER99_11785)	recA	2609152..2610198 (-)	1047	WP_014232974.1	recombinase RecA	Machinery gene
VER99_RS11790 (VER99_11790)	pncC	2610389..2610880 (-)	492	WP_020333963.1	nicotinamide-nucleotide amidase	-
VER99_RS11795 (VER99_11795)	mutS	2610965..2613526 (+)	2562	WP_014232976.1	DNA mismatch repair protein MutS	-
VER99_RS11800 (VER99_11800)	rpoS	2613601..2614587 (-)	987	WP_024372915.1	RNA polymerase sigma factor RpoS	Regulator
VER99_RS11805 (VER99_11805)	-	2614668..2615591 (-)	924	WP_024372916.1	peptidoglycan DD-metalloendopeptidase family protein	-
VER99_RS11810 (VER99_11810)	-	2615605..2616231 (-)	627	WP_014232979.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
VER99_RS11815 (VER99_11815)	surE	2616231..2616977 (-)	747	WP_024372917.1	5'/3'-nucleotidase SurE	-
VER99_RS11820 (VER99_11820)	truD	2617007..2618050 (-)	1044	WP_020333968.1	tRNA pseudouridine(13) synthase TruD	-
VER99_RS11825 (VER99_11825)	ispF	2618093..2618572 (-)	480	WP_014232982.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
VER99_RS11830 (VER99_11830)	ispD	2618586..2619293 (-)	708	WP_020333970.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
VER99_RS11835 (VER99_11835)	ftsB	2619295..2619576 (-)	282	WP_014232984.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37315.19 Da
• Isoelectric Point: 4.7268

>NTDB_id=919710 VER99_RS11800 WP_024372915.1 2613601..2614587(-) (rpoS) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
MSISNTVTKVEEFDFDDESVKTVASQLGKSSSTESKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDGNNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=919710 VER99_RS11800 WP_024372915.1 2613601..2614587(-) (rpoS) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGATTTTGACGATGAGTCAGTGAAGACCGTTGCGAGTCAACT
CGGAAAATCATCATCCACAGAAAGCAAAACTGCTGCGCGTGAAGAATTCGATGCAAGCAGCAAGAGCTTAGATGCCACCC
AATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTCACTGCTGAAGAAGAAGTGCTTTATGCTCGACGCGCATTACGT
GGCGACGAAGCTGCTCGTAAGCGCATGATCGAAAGTAACTTACGCTTAGTTGTAAAGATCTCTCGTCGTTACAGCAACCG
CGGTTTAGCCCTTCTGGACCTTATTGAAGAAGGTAACCTTGGCTTGATCCGTGCAGTTGAGAAATTCGACCCAGAACGCG
GTTTCCGTTTCTCTACCTATGCAACATGGTGGATTCGACAAACGATCGAACGTGCGTTGATGAACCAAACGCGTACCATT
CGTTTACCGATTCACGTTGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGATCATGA
ACCAACAGCCGAAGAGATTGCAGCGCAACTTGATATTCCTGTTGAAGATGTCAGCAAAATGCTTCGCTTGAATGAGCGTA
TTAGTTCTGTCGACACGCCAATTGGTGGTGATGGTGAAAAAGCACTACTTGATATTATTCCAGATGGTAACAATTCTGAC
CCTGAAGTTTCGACACAAGATGACGATATCAAGTCTTCTCTAATCCATTGGCTTGAAGAGTTGAACCCGAAACAGAAAGA
AGTGTTGGCTCGTCGTTTTGGTTTATTAGGTTATGAACCTTCAACGCTGGAAGAAGTAGGGCGTGAAATTGGACTTACTC
GTGAACGCGTTCGCCAGATCCAAGTGGAAGGTCTACGTCGTCTACGCGAAGTATTGATTAAACAAGGCCTGAATATGGAA
AACTTGTTTAACGTCGAAGATGACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	84.132	100	0.857