Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   OCV36_RS09020 Genome accession   NZ_AP025483
Coordinates   1993572..1994753 (+) Length   393 a.a.
NCBI ID   WP_135454884.1    Uniprot ID   -
Organism   Vibrio echinoideorum strain DSM 107264     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1988572..1999753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV36_RS09000 - 1988666..1989682 (+) 1017 WP_135454876.1 GTP-binding protein -
  OCV36_RS09005 - 1989811..1990683 (-) 873 WP_135454878.1 aspartoacylase -
  OCV36_RS09010 - 1990949..1991863 (-) 915 WP_135454880.1 EamA family transporter -
  OCV36_RS09015 - 1991968..1993356 (+) 1389 WP_135454882.1 PLP-dependent aminotransferase family protein -
  OCV36_RS09020 cqsA 1993572..1994753 (+) 1182 WP_135454884.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  OCV36_RS09025 - 1995040..1997088 (-) 2049 WP_135454886.1 hybrid sensor histidine kinase/response regulator -
  OCV36_RS09030 - 1997506..1998693 (-) 1188 WP_135454888.1 carboxylesterase -
  OCV36_RS09035 - 1998731..1999606 (-) 876 WP_245300899.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43770.84 Da        Isoelectric Point: 6.3853

>NTDB_id=91971 OCV36_RS09020 WP_135454884.1 1993572..1994753(+) (cqsA) [Vibrio echinoideorum strain DSM 107264]
MSDKSKNKPLPSFIEERLNFYIQDLITQNESQRHLVLGKRPSHDAVVMQSNDYLALSHNKQIQTAHRDAISEHDDNVVMS
AIFLQDEQSKPAFETELANFVGMESCLLSQSGWAANIGLLQTICPPNTPVYIDFFAHMSLWEGIRAAGATAHPFMHNNMN
HLRKQIQRYGSGVIVVDSVYSTIGTIAPLRDIYEMAQEFDCALVVDESHSLGTHGLNGAGLVQALGLTNKVDFITVSLAK
TFAYRAGAILGPKRLSETLPFVAYPAIFSSTVLPQEVIRLEKTLEVIKDSDDKRDILFKRAKALTTGLKRIGFSIRSESQ
IVALECGSESNTERVRDFLEERDVFGAVFCRPATGKNKNIIRFSVNADMTPRDIDHVLTVCHEAFNHSGLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=91971 OCV36_RS09020 WP_135454884.1 1993572..1994753(+) (cqsA) [Vibrio echinoideorum strain DSM 107264]
ATGAGTGATAAATCTAAAAACAAACCACTACCTTCCTTTATTGAAGAACGCTTGAACTTTTATATTCAAGATCTCATTAC
ACAAAACGAAAGCCAAAGGCACTTGGTATTGGGGAAACGCCCTAGCCATGATGCTGTGGTTATGCAAAGCAACGATTACC
TCGCTTTGTCGCATAATAAACAGATACAAACAGCGCATCGGGATGCGATTTCAGAGCACGATGATAATGTGGTGATGTCT
GCCATCTTCTTGCAAGATGAACAGTCTAAACCTGCATTTGAAACCGAGCTCGCTAACTTTGTGGGAATGGAAAGCTGCTT
GCTTTCTCAATCAGGTTGGGCGGCTAACATTGGCTTACTGCAAACGATCTGCCCTCCTAACACGCCTGTGTATATCGACT
TTTTTGCACACATGTCCTTATGGGAAGGTATTCGTGCTGCTGGCGCGACGGCCCACCCTTTTATGCACAACAACATGAAT
CATCTGCGTAAACAGATTCAACGCTATGGTTCAGGTGTGATTGTGGTCGACTCGGTCTACAGCACCATTGGTACGATTGC
CCCACTACGCGACATCTACGAAATGGCGCAAGAATTTGATTGTGCATTGGTCGTCGATGAATCCCACTCATTAGGCACTC
ATGGTTTAAATGGTGCAGGTTTGGTTCAAGCTTTAGGACTGACCAACAAAGTGGATTTCATTACCGTCAGCTTGGCCAAA
ACCTTTGCCTATCGTGCCGGTGCCATTCTAGGCCCTAAGCGATTGTCAGAGACGCTACCTTTTGTTGCTTACCCCGCTAT
TTTTAGCTCTACCGTGTTGCCACAAGAAGTCATTCGCTTAGAGAAGACATTGGAGGTCATTAAAGACTCTGATGACAAGC
GAGACATCTTGTTCAAACGCGCTAAAGCACTCACTACGGGACTAAAGCGAATCGGTTTTAGCATTCGCAGTGAATCTCAA
ATAGTGGCGTTAGAGTGTGGCAGTGAAAGCAACACTGAGCGTGTGCGTGACTTCCTAGAGGAACGTGACGTTTTTGGTGC
TGTATTCTGTCGGCCCGCGACTGGGAAAAACAAAAACATCATCCGCTTTTCGGTAAATGCAGACATGACTCCACGCGACA
TCGATCATGTTCTCACGGTGTGTCACGAGGCCTTTAATCATTCTGGCTTAGAGTTTGTTTAG

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.106

98.473

0.562

Multiple sequence alignment