Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   VER99_RS09630 Genome accession   NZ_CP141822
Coordinates   2134558..2135919 (-) Length   453 a.a.
NCBI ID   WP_049794667.1    Uniprot ID   -
Organism   Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2129558..2140919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VER99_RS09595 (VER99_09595) moaE 2130116..2130571 (-) 456 WP_020335667.1 molybdopterin synthase catalytic subunit MoaE -
  VER99_RS09600 (VER99_09600) moaD 2130573..2130830 (-) 258 WP_020335669.1 molybdopterin synthase sulfur carrier subunit -
  VER99_RS09605 (VER99_09605) moaC 2130827..2131306 (-) 480 WP_014232530.1 cyclic pyranopterin monophosphate synthase MoaC -
  VER99_RS09610 (VER99_09610) moaB 2131334..2131846 (-) 513 WP_014232531.1 molybdenum cofactor biosynthesis protein B -
  VER99_RS09615 (VER99_09615) moaA 2131947..2132936 (-) 990 WP_014232532.1 GTP 3',8-cyclase MoaA -
  VER99_RS09620 (VER99_09620) - 2133243..2134139 (+) 897 WP_020335670.1 YvcK family protein -
  VER99_RS09625 (VER99_09625) luxU 2134217..2134561 (-) 345 WP_020335671.1 quorum-sensing phosphorelay protein LuxU -
  VER99_RS09630 (VER99_09630) luxO 2134558..2135919 (-) 1362 WP_049794667.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  VER99_RS09635 (VER99_09635) uvrB 2136250..2138280 (-) 2031 WP_014232536.1 excinuclease ABC subunit UvrB -
  VER99_RS09645 (VER99_09645) rsxA 2139266..2139844 (+) 579 WP_014232537.1 electron transport complex subunit RsxA -
  VER99_RS09650 (VER99_09650) rsxB 2139848..2140444 (+) 597 WP_014232538.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50378.40 Da        Isoelectric Point: 6.0277

>NTDB_id=919700 VER99_RS09630 WP_049794667.1 2134558..2135919(-) (luxO) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
MVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLKHRIPDLILLDLRLPDMTGMDVLHAVKQSHPDVPIIFMTAHGSI
DTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRTIDSAASSKASIFIT
GESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGEDVVEIAYSLLG
YMSHEEGKGFVRFSQEVIDRFNNYEWPGNVRQLQNVLRNIVVLNHGKEITLDMLPPPLNQPLERKTSSATVESQVMTASD
IVPLWITEKTAIERAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNSKDERQKV

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=919700 VER99_RS09630 WP_049794667.1 2134558..2135919(-) (luxO) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
ATGGTCGAGGATACTGCGTCGGTTGCGGCGTTGTATCGCTCTTACCTGACGCCACTAGGTATTGACATCAATATTGTCGG
TACCGGGCGTGATGCGATCGAAAGTCTGAAACATCGTATTCCCGACCTTATTCTGCTTGATCTTCGTCTGCCTGACATGA
CGGGTATGGACGTTCTGCATGCAGTGAAACAAAGTCATCCAGACGTTCCTATCATCTTTATGACTGCACACGGCTCTATC
GACACTGCGGTAGAAGCAATGCGTCATGGCTCTCAAGACTTTTTGATTAAACCGTGTGAAGCCGACCGCTTGCGTGTCAC
GGTGAACAACGCGATACGTAAAGCGACCAAGTTAAAAAACGAAGCGGATAATCCCGGTAACCAGAATTATCAGGGTTTCA
TCGGTAGTAGCCAAACCATGCAACAGGTTTACCGCACCATTGACTCAGCAGCGAGCAGTAAGGCGAGTATTTTCATTACT
GGTGAAAGTGGCACGGGTAAAGAGGTGTGTGCCGAAGCTATCCATGCCGCAAGTAAACGAGGTGATAAACCATTTATTGC
GATTAACTGTGCAGCGATCCCGAAAGATCTGATTGAAAGTGAGTTGTTTGGTCACGTAAAAGGCGCGTTTACTGGTGCGG
CGAATGATCGTCAAGGTGCGGCAGAACTAGCGGATGGCGGTACGCTTTTCCTCGATGAATTGTGTGAAATGGACTTGGAC
TTACAGACCAAGTTGTTGCGATTTATCCAGACTGGTACCTTCCAGAAAGTCGGCTCCTCAAAAATGAAAAGCGTGGATGT
GCGCTTTGTGTGCGCCACCAACCGTGACCCTTGGAAAGAGGTTCAGGAAGGGCGCTTTCGTGAAGACCTATATTACCGCT
TATACGTAATACCATTGCATCTTCCACCTTTGCGTGAGCGTGGCGAAGACGTTGTCGAAATTGCTTATTCTTTATTGGGT
TATATGTCTCATGAAGAGGGGAAAGGCTTTGTACGCTTTTCGCAAGAAGTGATAGATCGATTTAATAACTATGAATGGCC
CGGTAACGTACGTCAGTTACAAAACGTGCTTCGCAATATCGTGGTGTTAAATCACGGTAAAGAAATTACTTTGGATATGC
TTCCGCCTCCATTGAATCAACCTTTGGAGCGTAAGACATCAAGCGCCACAGTTGAGTCTCAAGTGATGACAGCCTCGGAC
ATTGTGCCACTGTGGATTACGGAAAAAACGGCGATTGAACGCGCAATTGAAGCGTGCGACGGTAATATTCCTCGAGCGGC
AGGGTATCTAGATGTCAGCCCATCGACGATTTACCGTAAGCTACAAGCATGGAACAGCAAGGATGAGCGGCAAAAGGTAT
GA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-444)

Sigma-54 interaction domain (Sigma54_activat)

(134-299)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.83

98.896

0.859