Detailed information NTG0091970

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: OCV36_RS08915
• Genome accession: NZ_AP025483
• Coordinates: 1973369..1974793 (+)
• Length: 474 a.a.
• NCBI ID: WP_135454853.1
• Uniprot ID: -
• Organism: Vibrio echinoideorum strain DSM 107264
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1968369..1979793

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCV36_RS08900	-	1970668..1971378 (-)	711	WP_135454849.1	molecular chaperone	-
OCV36_RS08905	-	1971375..1971812 (-)	438	WP_135454851.1	DUF4402 domain-containing protein	-
OCV36_RS08910	-	1971866..1972300 (-)	435	WP_017075116.1	DUF4402 domain-containing protein	-
OCV36_RS08915	sbcB	1973369..1974793 (+)	1425	WP_135454853.1	exodeoxyribonuclease I	Machinery gene
OCV36_RS08920	-	1974819..1975190 (+)	372	WP_135454856.1	CidA/LrgA family protein	-
OCV36_RS08925	-	1975193..1975870 (+)	678	WP_010441230.1	LrgB family protein	-
OCV36_RS08930	cdd	1976355..1977242 (+)	888	WP_017075119.1	cytidine deaminase	-
OCV36_RS08935	purT	1977410..1978585 (+)	1176	WP_135454857.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
OCV36_RS08940	-	1978787..1979440 (-)	654	WP_135454861.1	thiopurine S-methyltransferase	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54601.98 Da
• Isoelectric Point: 4.9759

>NTDB_id=91970 OCV36_RS08915 WP_135454853.1 1973369..1974793(+) (sbcB) [Vibrio echinoideorum strain DSM 107264]
MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALITRITPQKAMSQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPEGIAWPENEEGYP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKAAQPKMFDYLYSMRHKRKLNELVDIVNMTPLMHVSGMFGRDCNY
TSWIVPMAWHPTNQNAVIVIDLAKDPSPLLELDADALRERLYTKRSELGEDELPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLALLREHPEIREKLIGLYSQERKYEKSDDVDTHLYDGFFSPGDKTAMDIIRETDPNNLAALDITFGDE
RIKPLLFRYRARHFPWTLDEAEQLKWANHCREFYESRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS

Nucleotide

• Length: 1425 bp

>NTDB_id=91970 OCV36_RS08915 WP_135454853.1 1973369..1974793(+) (sbcB) [Vibrio echinoideorum strain DSM 107264]
ATGAGTTCAGATAATCAGCCAACCTATTTCTTTTTCGATTACGAAACATGGGGCGTCAGCCCAGCGAAAGATCGCCCGAG
TCAGTTCGCCGGTGTTCGTACCGACCAAGATTTCAACGTTATCGGAGAGCCATTGGTTATCTATTGCCAACCTCCTGCTG
ATTACTTACCTGCACCTGAAGCTGCACTAATTACTCGCATCACACCTCAAAAAGCAATGTCTCAAGGCTTACCTGAACCT
GAATTTATCGCGAAGATCCACGCAGAGCTTGCTAAACCGAACACGACTAGCCTTGGCTACAACAGCATTCGATTCGATGA
CGAAGTAACACGCTACACCTGTTACCGTAACTTCATCGATCCATATGCATGGAGCTGGCAAAACGGCAACTCTCGTTGGG
ATTTACTCGACGTAATGCGCGCGGTACATGCACTTCGCCCTGAAGGCATTGCTTGGCCTGAAAATGAAGAAGGTTACCCA
AGTTTTAAACTGGAACACCTATCAGTGGCAAATGGCATTGAACACGAAAACGCGCACGATGCGATGGCCGATGTTATTGC
TACCATTGAATTAGCGAAGAAGTTGAAAGCTGCACAGCCTAAAATGTTTGACTACCTTTACAGCATGCGTCACAAACGTA
AATTGAATGAGTTAGTCGACATCGTAAACATGACGCCTTTAATGCATGTTTCGGGTATGTTTGGTCGCGATTGTAATTAC
ACGAGCTGGATTGTGCCTATGGCTTGGCACCCTACCAACCAAAATGCGGTTATCGTTATCGACTTAGCCAAAGACCCTAG
CCCATTGCTAGAGCTTGATGCAGATGCCCTTCGTGAAAGGCTCTACACTAAGCGCAGTGAGCTGGGCGAAGATGAGCTTC
CCGTACCCATCAAACTCGTCCAATTGAACAAGTGCCCTATTCTTGCGCCAGCGAAAACCCTAACGGCTGAAAATGCGGAA
ACTATTGGTATCGATCGTCAACAGTGCTTAAAGAACTTAGCGCTATTACGTGAACATCCAGAGATCCGCGAAAAACTGAT
CGGTTTGTATTCACAAGAACGCAAGTACGAGAAAAGCGACGACGTAGACACTCACCTTTACGACGGCTTCTTCTCACCAG
GCGACAAAACCGCAATGGACATCATTCGTGAAACTGACCCAAATAACTTAGCAGCGTTAGACATCACTTTTGGCGACGAA
CGTATTAAACCTTTGTTGTTCCGTTACCGCGCTCGACATTTCCCGTGGACGTTAGACGAAGCTGAACAACTGAAATGGGC
TAACCACTGTCGTGAGTTTTACGAAAGCCGTCTGGAAGAGTACATGCTGAATCTAGAGAACCTCGCACACGAACATGAAA
GTGACGAGAAGAAAATGGCTATCTTAAAAGCGGTTTATCAATACGTAGAAAAGCTAGCGAGCTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-191)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	76.321	99.789	0.762