Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   VER99_RS08515 Genome accession   NZ_CP141822
Coordinates   1875435..1876895 (+) Length   486 a.a.
NCBI ID   WP_014232111.1    Uniprot ID   A0AAN0Y2P0
Organism   Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1870435..1881895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VER99_RS08500 (VER99_08500) - 1871582..1872277 (+) 696 WP_020334295.1 chromosome partitioning ATPase -
  VER99_RS08505 (VER99_08505) - 1872286..1873086 (+) 801 WP_024373082.1 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein -
  VER99_RS08510 (VER99_08510) - 1873099..1875411 (+) 2313 WP_020334657.1 response regulator -
  VER99_RS08515 (VER99_08515) luxO 1875435..1876895 (+) 1461 WP_014232111.1 sigma-54-dependent transcriptional regulator Regulator
  VER99_RS08520 (VER99_08520) - 1876876..1877931 (+) 1056 WP_020334659.1 glycosyltransferase family 4 protein -
  VER99_RS08525 (VER99_08525) - 1878069..1879274 (+) 1206 WP_024373083.1 glycosyltransferase family 4 protein -
  VER99_RS08530 (VER99_08530) - 1879267..1880448 (+) 1182 WP_020334661.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 486 a.a.        Molecular weight: 54678.61 Da        Isoelectric Point: 5.6512

>NTDB_id=919697 VER99_RS08515 WP_014232111.1 1875435..1876895(+) (luxO) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
MKPKVLLIEDSTSLAILYKQYVQHEPYDLFHVETGKEAIAFIERNVPQLVILDFRLPDMDGEQILDWINENQVPTSVVIA
TAHGSVDLAVSLVQKGAKDFLEKPINADRLKTSIALHLQQVKLENLVEDIENKFDRNRFHGFIGSSLPMQGVYKIIDSVA
PTTASVFIVGESGTGKEVCAEAIHRESKRKDKPFIAINCGAIPKDLMESEIFGHVRGAFTGATADRKGAASMANGGTLFL
DELCEMELEMQKKLLRFLQTGTFTPLGANKEMKVDIRIICATNRDPLVEVEEGRFREDLYYRVHVVPIDMPPLRERGNDI
TTLATHFLKLYAKEDGKKFNAIHRDAEPTLKRYAWPGNVRQLQNIIRNIVVLNDDSHLRLEHLPSQVTSSRAPKQNSVAK
PEPVITPQPVVINEAPENSHDAVTEPQIERPVAIRPMWQIEREAIQQAIDYCDGNVLNAAVLLELSPSTVYRKKQAWEAE
DEQQLV

Nucleotide


Download         Length: 1461 bp        

>NTDB_id=919697 VER99_RS08515 WP_014232111.1 1875435..1876895(+) (luxO) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
ATGAAACCAAAAGTACTACTTATCGAAGACTCAACTTCTCTTGCTATTTTGTACAAACAGTATGTACAGCACGAGCCCTA
TGACCTGTTTCATGTAGAGACAGGTAAAGAAGCCATCGCCTTTATTGAAAGAAATGTTCCCCAATTAGTTATTCTGGACT
TTAGACTGCCCGACATGGATGGTGAGCAAATTCTGGATTGGATTAACGAGAACCAAGTCCCGACATCCGTCGTCATTGCC
ACGGCGCATGGCTCAGTAGATTTGGCGGTTAGCCTTGTGCAAAAAGGAGCGAAAGACTTTCTGGAAAAACCAATTAATGC
TGATCGTCTTAAAACCTCCATCGCTCTGCACTTGCAACAAGTTAAACTGGAGAACCTTGTCGAAGACATAGAAAACAAAT
TCGATCGAAACCGATTCCACGGCTTCATCGGATCTAGCCTTCCAATGCAAGGTGTGTACAAGATCATCGATTCAGTGGCA
CCAACGACAGCAAGTGTTTTTATTGTCGGTGAAAGTGGCACAGGTAAGGAAGTGTGCGCCGAAGCCATCCACCGTGAGAG
TAAGCGTAAAGATAAACCGTTTATCGCCATTAACTGTGGTGCGATTCCAAAAGATCTCATGGAGAGTGAAATCTTTGGTC
ACGTCAGGGGCGCATTTACAGGCGCTACTGCCGATCGCAAAGGTGCGGCCTCAATGGCCAACGGTGGTACGCTTTTTCTT
GATGAGCTGTGTGAGATGGAACTTGAGATGCAAAAGAAATTACTCAGATTTTTGCAGACAGGTACCTTTACCCCACTAGG
CGCAAATAAAGAAATGAAAGTCGATATTCGTATCATCTGCGCGACGAACCGAGATCCTCTTGTTGAAGTAGAAGAAGGCC
GTTTCAGAGAAGATCTCTACTACCGCGTGCATGTAGTGCCTATTGATATGCCACCATTACGCGAGCGCGGCAATGATATT
ACGACATTAGCGACTCACTTTCTTAAGCTGTACGCTAAAGAAGATGGCAAAAAGTTTAACGCAATCCACCGAGATGCAGA
GCCAACGCTAAAACGCTATGCGTGGCCGGGTAACGTCCGTCAGCTTCAAAACATTATTCGCAATATCGTGGTCCTTAATG
ACGATAGTCATTTGCGCCTTGAGCATTTGCCATCTCAGGTCACATCAAGCCGTGCGCCAAAGCAAAACAGCGTAGCTAAA
CCTGAACCAGTCATCACTCCACAACCCGTCGTGATCAATGAGGCTCCTGAAAATAGTCACGACGCGGTTACTGAGCCGCA
AATTGAAAGACCTGTAGCGATAAGGCCAATGTGGCAAATTGAACGTGAGGCAATACAGCAAGCCATTGATTACTGCGACG
GAAACGTGCTGAACGCGGCGGTACTTTTAGAGCTTAGCCCTTCTACGGTATACCGTAAGAAGCAAGCCTGGGAAGCTGAA
GATGAGCAACAACTCGTGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Bacterial regulatory protein, Fis family (HTH_8)

(437-473)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

50.106

96.914

0.486