Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   VER99_RS06265 Genome accession   NZ_CP141822
Coordinates   1375800..1377221 (-) Length   473 a.a.
NCBI ID   WP_324707812.1    Uniprot ID   -
Organism   Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1370800..1382221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VER99_RS06240 (VER99_06240) - 1371406..1372056 (+) 651 WP_020333041.1 thiopurine S-methyltransferase -
  VER99_RS06245 (VER99_06245) purT 1372148..1373323 (-) 1176 WP_020333042.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  VER99_RS06250 (VER99_06250) cdd 1373471..1374358 (-) 888 WP_020333043.1 cytidine deaminase -
  VER99_RS06255 (VER99_06255) - 1374688..1375365 (-) 678 WP_014231625.1 LrgB family protein -
  VER99_RS06260 (VER99_06260) - 1375367..1375741 (-) 375 WP_020333045.1 CidA/LrgA family protein -
  VER99_RS06265 (VER99_06265) sbcB 1375800..1377221 (-) 1422 WP_324707812.1 exodeoxyribonuclease I Machinery gene
  VER99_RS06270 (VER99_06270) - 1377710..1377895 (+) 186 WP_020333097.1 hypothetical protein -
  VER99_RS06275 (VER99_06275) - 1378067..1378576 (+) 510 WP_020333098.1 DUF4145 domain-containing protein -
  VER99_RS06280 (VER99_06280) - 1378952..1379467 (+) 516 WP_020333099.1 hypothetical protein -
  VER99_RS06285 (VER99_06285) - 1379573..1380301 (+) 729 WP_020333100.1 class I SAM-dependent methyltransferase -
  VER99_RS06290 (VER99_06290) - 1380651..1381268 (+) 618 WP_020333101.1 hypothetical protein -
  VER99_RS06295 (VER99_06295) - 1381458..1381931 (+) 474 WP_020333102.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54465.67 Da        Isoelectric Point: 4.8188

>NTDB_id=919696 VER99_RS06265 WP_324707812.1 1375800..1377221(-) (sbcB) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGIIPQKAVQEGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEEGFP
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRQKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLNNLALLRQHPEIREKLISLFSVERTFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIALLKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=919696 VER99_RS06265 WP_324707812.1 1375800..1377221(-) (sbcB) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAAACTTGGGGAACAAACCCTGCAAAAGATCGTCCGAG
TCAATTTGCTGGTGTTCGCACAGATGAAAATTTCAATATCATCGGCGAGCCTTTAGTTATGTATTGCCAGCCACCTGCTG
ATTACCTTCCTTCTCCTGAAGCTGCTTTAATTACTGGGATTATCCCACAAAAGGCGGTGCAGGAAGGTCTGCCTGAGCCT
GAGTTCATTGCTAAAATTCATGCCGAGTTATCCAAACCCAATACCACCAGTTTGGGTTACAACAGTATTCGTTTTGATGA
TGAAGTGACGCGTTACACCTGTTACCGCAACTTTATTGACCCGTATGCGTGGAGTTGGCAGAACGGCAATTCGCGCTGGG
ATTTACTTGATGTGCTGCGCGCTTGTCATGCCCTTCGACCAGAAGGCGTTGAATGGCCAGAAAATGAAGAAGGCTTTCCT
AGCTTCAAACTTGAGCATTTGTCTGTTGCCAACGGTATTGAACACAGCAATGCACACGATGCCATGGCTGACGTTATCGC
AACGATCGAGATGGCGAAGAAAGTTAAAGCCGCTCAGCCTAAGTTGTTCGATTACTTCTTCTCCATGCGTCAAAAGCGTA
AGCTGAATGAATTGGTTGATATCGTTAATATGACGCCTCTGATGCACGTTTCTGGCATGTTAGGACGCGAGTGTCAGTAC
ACAAGCTGGATTGTGCCTGTTGCATGGCATCCGACGAACAACAACGCGGTTATCACGATTGATTTAGCCAAAGATCCGCA
ACCTATCCTAGAGCTGTCTGCGGAAGAGCTGCACGAAAGGTTGTACACCAAGCGAGAAGATCTCGGTGATTTGCTGCCTG
TGCCAGTTAAACTTGTTCACTTGAATAAGTGCCCTATTCTGGCACCAGCGAAAACACTGACGGCTGAAAACGCGGAGTCT
ATCGGCATTGACCGTCAACAATGCTTGAACAATCTGGCTCTGTTGCGTCAGCACCCAGAGATTCGAGAAAAGCTGATCAG
CCTGTTTTCTGTTGAGCGCACATTTGAAAAAAGTGATGATGTGGATACTCAACTGTACGATGGCTTCTTCTCTCCGGCGG
ATCGCGCAGCGATGGATATTATTCGCGAGACCGACCCGAATAATCTGGCCGCTCTGGATATTGAGTTCGATGACAAGCGC
ATTAAACCACTGTTGTTCCGTTACCGTGCTCGAAACTTCCCTGGCACGTTAGACGAACAGGAACAAAGACGTTGGGCACA
GCACTGCCGTGAAGTGTTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAAATAGCACTATTAAAATCCGTTTATCGTTACGTAGAGAGCCTAGCCTCTTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.493

100

0.795