Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   VDS61_RS01350 Genome accession   NZ_CP141812
Coordinates   255674..257482 (-) Length   602 a.a.
NCBI ID   WP_076787487.1    Uniprot ID   A0A385AFP9
Organism   Latilactobacillus curvatus strain K285     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 250674..262482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS61_RS01325 (VDS61_01320) - 250783..252324 (+) 1542 WP_004265146.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase -
  VDS61_RS01330 (VDS61_01325) - 252430..252984 (+) 555 WP_076787481.1 hypothetical protein -
  VDS61_RS01335 (VDS61_01330) - 253258..254145 (+) 888 WP_324722088.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  VDS61_RS01340 (VDS61_01335) - 254142..254822 (+) 681 WP_076787486.1 metal ABC transporter ATP-binding protein -
  VDS61_RS01345 (VDS61_01340) - 254857..255633 (+) 777 WP_065825914.1 metal ABC transporter permease -
  VDS61_RS01350 (VDS61_01345) pepF 255674..257482 (-) 1809 WP_076787487.1 oligoendopeptidase F Regulator
  VDS61_RS01355 (VDS61_01350) - 257679..258887 (+) 1209 WP_004265087.1 LCP family protein -
  VDS61_RS01360 (VDS61_01355) - 259066..260304 (+) 1239 WP_080752751.1 NupC/NupG family nucleoside CNT transporter -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 67267.23 Da        Isoelectric Point: 4.5897

>NTDB_id=919654 VDS61_RS01350 WP_076787487.1 255674..257482(-) (pepF) [Latilactobacillus curvatus strain K285]
MSTQQLPTRDAVPEKLTWDLTTIFKNDAAFEVAFKKVKTQLPTLKTLDRPFESADQLVATIEQILATFRQLETIYVYASM
KNDQDTANATYQGYQAQVDSLAAEVSAAAAFLEPAILAIPAGQLADWLTKTPNLAVYSHFIQTITDSRDHVLSGQEEALL
AAAGDIFSAASQTFSVLDNSDLQFPEVTDENGQTLQLSDGVYSQLLQSTNRSVRQAAFEALYKTYGQFKNTFATTLATEI
KGHNYLAQVHHYDSARQAALAPKAIPEAVYTTLVDQVNQHLPLLHRYTELRKKQLNLSELHMFDLYTPLLGKPALTYTYE
QAQATAKEALSILGPDYAKQVTHIVDDRLIDVCENQGKRSGAYSGGAYDTNPFILLNWQDDLNNLYTLVHETGHSVHSAF
TRQTQDYVYGDYPIFVAEIASTTNENLLTEYLLQTQSDPKVQAYLLNYYLDGFKGTVFRQTQFAEFEHAMHAAAANGQPL
TAEFMSQQYADINSRYYGPAVVNDPQIALEWTRIPHFYMNYYVYQYATGFAAATTLANGISTKQPGALDHYLDYLKAGSS
AYPIEIMQQAGVDMTSADYLERAFAVFEERLDQLEALLANLN

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=919654 VDS61_RS01350 WP_076787487.1 255674..257482(-) (pepF) [Latilactobacillus curvatus strain K285]
ATGTCAACTCAACAACTCCCCACCCGCGATGCTGTTCCAGAAAAGCTCACATGGGACTTAACCACGATTTTCAAAAATGA
TGCAGCTTTTGAAGTAGCCTTTAAGAAAGTTAAAACGCAATTACCCACACTCAAAACACTTGATCGTCCGTTTGAATCGG
CTGATCAATTAGTCGCTACAATCGAACAAATCTTAGCCACTTTCCGCCAACTCGAAACAATTTATGTTTATGCTAGCATG
AAAAATGATCAAGATACTGCTAACGCAACTTATCAAGGCTATCAAGCCCAAGTGGACAGCTTAGCGGCCGAAGTTTCAGC
AGCAGCGGCCTTTTTAGAGCCTGCGATTCTTGCTATTCCAGCTGGGCAATTAGCAGATTGGCTTACCAAGACGCCTAATT
TAGCAGTTTACAGCCACTTCATTCAAACCATTACCGATAGTCGAGACCATGTCTTATCTGGGCAAGAAGAAGCCTTGTTA
GCTGCTGCCGGAGATATCTTCAGTGCTGCTAGTCAAACCTTCAGCGTCTTAGACAACTCGGATTTACAATTCCCAGAAGT
GACTGACGAAAACGGACAAACGTTGCAGCTTTCAGATGGGGTCTACAGCCAACTTTTACAATCAACCAACCGATCAGTCC
GCCAAGCAGCCTTCGAAGCACTTTACAAAACTTATGGTCAATTCAAAAATACATTTGCGACGACGCTTGCCACTGAAATC
AAAGGTCACAATTACTTAGCTCAAGTCCATCACTACGATAGTGCACGCCAAGCAGCGCTAGCACCAAAAGCAATTCCAGA
AGCCGTCTATACAACCTTGGTTGATCAAGTGAACCAACACTTACCACTTTTACATCGCTATACTGAATTACGCAAAAAGC
AACTGAATTTATCTGAATTACACATGTTTGATCTCTACACACCACTTCTAGGAAAACCCGCATTAACCTACACTTATGAG
CAGGCGCAAGCAACTGCCAAAGAGGCGTTGTCGATCCTAGGACCCGATTACGCCAAACAAGTTACCCATATTGTTGATGA
CCGCTTAATCGATGTTTGTGAAAATCAAGGGAAACGGAGTGGCGCCTATTCTGGCGGCGCTTATGACACCAATCCCTTCA
TTTTATTAAACTGGCAAGATGATTTAAACAACTTATACACATTGGTCCATGAAACGGGGCATAGTGTCCACAGCGCCTTC
ACCCGTCAGACCCAAGATTATGTTTATGGCGACTATCCAATTTTCGTGGCCGAAATTGCGTCAACAACCAATGAAAATCT
CTTAACGGAATATTTATTGCAAACACAATCTGATCCTAAGGTCCAGGCCTATCTATTGAACTACTATTTGGATGGTTTTA
AAGGCACTGTTTTCCGTCAAACGCAATTCGCTGAGTTCGAACATGCGATGCATGCTGCCGCTGCCAATGGTCAGCCACTA
ACTGCCGAGTTCATGTCACAACAATATGCGGACATTAATAGCCGCTACTACGGACCTGCCGTCGTTAACGATCCACAGAT
TGCCCTCGAATGGACTCGGATTCCACATTTCTACATGAACTATTATGTTTACCAATACGCAACCGGCTTTGCTGCTGCAA
CGACTCTCGCTAACGGCATTAGCACCAAACAGCCCGGTGCTCTCGATCACTATTTAGACTACCTAAAAGCTGGGAGCTCC
GCCTACCCAATTGAAATTATGCAACAAGCCGGCGTCGATATGACGAGTGCCGACTATCTCGAACGCGCTTTTGCAGTTTT
CGAAGAACGTCTGGATCAACTCGAAGCCCTACTTGCTAACCTAAATTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(205-585)

Oligopeptidase F (Peptidase_M3_N)

(116-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A385AFP9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.992

98.173

0.54