Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   VCT43_RS13895 Genome accession   NZ_CP141808
Coordinates   2890369..2890995 (-) Length   208 a.a.
NCBI ID   WP_324671593.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain WD01     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2885369..2895995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCT43_RS13880 (VCT43_13880) helD 2885608..2887662 (-) 2055 WP_045338026.1 DNA helicase IV -
  VCT43_RS13885 (VCT43_13885) - 2887785..2888231 (+) 447 WP_015570894.1 YccF domain-containing protein -
  VCT43_RS13890 (VCT43_13890) yccS 2888250..2890412 (+) 2163 WP_015570895.1 YccS family putative transporter -
  VCT43_RS13895 (VCT43_13895) sxy/tfoX 2890369..2890995 (-) 627 WP_324671593.1 TfoX/Sxy family DNA transformation protein Regulator
  VCT43_RS13900 (VCT43_13900) sulA 2891213..2891722 (+) 510 WP_026094322.1 SOS-induced cell division inhibitor SulA -
  VCT43_RS13905 (VCT43_13905) ompA 2892079..2893131 (+) 1053 WP_017694761.1 porin OmpA -
  VCT43_RS13910 (VCT43_13910) matP 2893197..2893649 (-) 453 WP_006809347.1 macrodomain Ter protein MatP -
  VCT43_RS13915 (VCT43_13915) - 2893836..2895596 (+) 1761 WP_047736822.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24007.66 Da        Isoelectric Point: 9.2159

>NTDB_id=919627 VCT43_RS13895 WP_324671593.1 2890369..2890995(-) (sxy/tfoX) [Enterobacter hormaechei strain WD01]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRLLFALEGAIEGLHEAALPADIRRELMEWFNALPESQGHHSAM

Nucleotide


Download         Length: 627 bp        

>NTDB_id=919627 VCT43_RS13895 WP_324671593.1 2890369..2890995(-) (sxy/tfoX) [Enterobacter hormaechei strain WD01]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAGGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCCTCTTTTCTGACCCTGATGAAACGAGGACGGCCAGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAGCTGCTTCAGCTCTCCTCGTTTGCTCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAGGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGTTATTGTTCGCGCTTGAAGGCGCCATCGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTATGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCATGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572