Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OCV36_RS02710 Genome accession   NZ_AP025483
Coordinates   551022..551540 (+) Length   172 a.a.
NCBI ID   WP_017079953.1    Uniprot ID   A0A2J6U6Q3
Organism   Vibrio echinoideorum strain DSM 107264     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 546022..556540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV36_RS02700 gshA 548768..550336 (+) 1569 WP_135457180.1 glutamate--cysteine ligase -
  OCV36_RS02705 - 550347..550997 (+) 651 WP_029224698.1 hypothetical protein -
  OCV36_RS02710 luxS 551022..551540 (+) 519 WP_017079953.1 S-ribosylhomocysteine lyase Regulator
  OCV36_RS02715 - 551708..552979 (-) 1272 WP_017072553.1 HlyC/CorC family transporter -
  OCV36_RS02720 - 553107..553901 (-) 795 WP_135457179.1 inner membrane protein YpjD -
  OCV36_RS02725 ffh 554102..555496 (+) 1395 WP_029224697.1 signal recognition particle protein -
  OCV36_RS02730 rpsP 555708..555956 (+) 249 WP_004735508.1 30S ribosomal protein S16 -
  OCV36_RS02735 rimM 555981..556535 (+) 555 WP_017072550.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18936.61 Da        Isoelectric Point: 4.4820

>NTDB_id=91959 OCV36_RS02710 WP_017079953.1 551022..551540(+) (luxS) [Vibrio echinoideorum strain DSM 107264]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNQLNGSDVEIIDISP
MGCRTGFYMSLIGTPSEQQVADGWLAAMQDVLKVENQNKIPELNEYQCGTAAMHSLDEAKDIANAIIAAGISVNKNDELA
LPESMLQELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=91959 OCV36_RS02710 WP_017079953.1 551022..551540(+) (luxS) [Vibrio echinoideorum strain DSM 107264]
ATGCCTTTATTAGATAGTTTCACTGTTGATCACACACGCATGAACGCACCAGCCGTTCGTGTTGCTAAAACAATGCAAAC
CCCTAAAGGGGATACCATCACTGTGTTTGACCTGCGTTTTACTGCGCCAAACAAAGATATCCTATCTGAGAAAGGTATTC
ATACTCTAGAGCACCTATACGCAGGATTTATGCGTAATCAACTGAACGGTTCCGATGTAGAGATCATCGATATTTCACCG
ATGGGCTGTCGTACTGGTTTCTACATGAGCTTGATTGGTACGCCTTCAGAGCAACAAGTGGCAGACGGTTGGTTGGCTGC
AATGCAAGATGTGCTGAAAGTTGAGAATCAAAATAAGATCCCTGAACTGAACGAATACCAATGTGGTACTGCGGCAATGC
ACTCTTTGGATGAAGCGAAAGATATCGCCAACGCGATCATCGCTGCAGGTATCTCTGTAAACAAAAATGATGAACTGGCA
CTGCCAGAGTCGATGCTTCAAGAGCTTAAAATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2J6U6Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884

Multiple sequence alignment