Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   AB2M34_RS19330 Genome accession   NZ_CP161903
Coordinates   3589082..3589516 (-) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain DYJ24     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3584082..3594516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2M34_RS19315 (AB2M34_19315) poxB 3584481..3586205 (-) 1725 WP_129134184.1 pyruvate oxidase -
  AB2M34_RS19320 (AB2M34_19320) mutT 3586272..3586721 (-) 450 WP_017697018.1 8-oxo-dGTP diphosphatase MutT -
  AB2M34_RS19325 (AB2M34_19325) topB 3586834..3589017 (-) 2184 WP_076458431.1 DNA topoisomerase III -
  AB2M34_RS19330 (AB2M34_19330) lrpC 3589082..3589516 (-) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  AB2M34_RS19335 (AB2M34_19335) ydzA 3589701..3589991 (+) 291 WP_014478869.1 DUF3817 domain-containing protein -
  AB2M34_RS19340 (AB2M34_19340) amj 3590036..3590845 (-) 810 WP_014478868.1 lipid II flippase Amj -
  AB2M34_RS19345 (AB2M34_19345) ydaG 3591351..3591773 (-) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  AB2M34_RS19350 (AB2M34_19350) ydaF 3591851..3592402 (-) 552 WP_014478866.1 GNAT family N-acetyltransferase -
  AB2M34_RS19355 (AB2M34_19355) lyxE 3592490..3592993 (-) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  AB2M34_RS19360 (AB2M34_19360) ydaD 3593009..3593869 (-) 861 WP_003246648.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=919560 AB2M34_RS19330 WP_003246585.1 3589082..3589516(-) (lrpC) [Bacillus subtilis strain DYJ24]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=919560 AB2M34_RS19330 WP_003246585.1 3589082..3589516(-) (lrpC) [Bacillus subtilis strain DYJ24]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATTAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1