Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   AB2M34_RS18030 Genome accession   NZ_CP161903
Coordinates   3340969..3342099 (-) Length   376 a.a.
NCBI ID   WP_129134211.1    Uniprot ID   -
Organism   Bacillus subtilis strain DYJ24     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3335969..3347099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2M34_RS17985 (AB2M34_17985) cotJC 3336009..3336578 (-) 570 WP_014479096.1 spore coat protein CotJC -
  AB2M34_RS17990 (AB2M34_17990) cotJB 3336593..3336856 (-) 264 WP_003219491.1 spore coat protein CotJB -
  AB2M34_RS17995 (AB2M34_17995) cotJA 3336840..3337088 (-) 249 WP_003219489.1 spore coat-associated protein CotJA -
  AB2M34_RS18000 (AB2M34_18000) yesF 3337213..3338081 (-) 869 Protein_3540 NAD-dependent epimerase/dehydratase family protein -
  AB2M34_RS18005 (AB2M34_18005) yesE 3338078..3338521 (-) 444 WP_069964034.1 nuclear transport factor 2 family protein -
  AB2M34_RS18010 (AB2M34_18010) yezE 3338600..3339184 (-) 585 WP_014479093.1 TetR/AcrR family transcriptional regulator -
  AB2M34_RS18015 (AB2M34_18015) - 3339299..3339793 (-) 495 WP_069964033.1 spore coat protein -
  AB2M34_RS18020 (AB2M34_18020) yeeI 3339927..3340646 (-) 720 WP_003233863.1 YebC/PmpR family DNA-binding transcriptional regulator -
  AB2M34_RS18025 (AB2M34_18025) phrH 3340806..3340979 (-) 174 WP_069837348.1 phosphatase RapH inhibitor PhrH -
  AB2M34_RS18030 (AB2M34_18030) rapC 3340969..3342099 (-) 1131 WP_129134211.1 response regulator aspartate phosphatase RapH Regulator
  AB2M34_RS18035 (AB2M34_18035) - 3342247..3343407 (-) 1161 WP_069837347.1 lysozyme inhibitor LprI family protein -
  AB2M34_RS18040 (AB2M34_18040) - 3343564..3344484 (-) 921 WP_129134210.1 DUF5655 domain-containing protein -
  AB2M34_RS18045 (AB2M34_18045) - 3344497..3344835 (-) 339 WP_024571793.1 hypothetical protein -
  AB2M34_RS18050 (AB2M34_18050) yeeF 3345001..3347010 (+) 2010 WP_087614407.1 LXG family T7SS effector deoxyribonuclease toxin YeeF -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44049.44 Da        Isoelectric Point: 6.0259

>NTDB_id=919557 AB2M34_RS18030 WP_129134211.1 3340969..3342099(-) (rapC) [Bacillus subtilis strain DYJ24]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEVLKAEVEQDIQRMEEDQDLLIYYSLMCFRHQLMLDYLEPGQPYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDEIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQKNPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEKALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=919557 AB2M34_RS18030 WP_129134211.1 3340969..3342099(-) (rapC) [Bacillus subtilis strain DYJ24]
TTGAGTCAAGCCATACCGTCTTCGCGTGTAGGTGTTAAGATTAATGAATGGTACAAGATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGGTTCTGAAAGCGGAGGTGGAGCAGGACATTCAGAGGATGGAAGAGGATCAGGATTTGCTGATCTATTATT
CTCTGATGTGTTTCCGGCACCAGCTGATGCTGGATTATTTGGAGCCGGGACAACCTTACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAAACGATAGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGATCAAAAAGAATATGTGGAAGCGATCGGGTATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGAAATTGAGAAAGCGGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTAGACATTTATCAAAAAAATCCCCTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAAAAGGCGCTGGAATTGGCCATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATCGCGAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCAGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGACGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCGTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCTGCTGCGTTTTATCGGAAAGTGCTAAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_7)

(222-251)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(144-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.957

100

0.41
  rapF Bacillus subtilis subsp. subtilis str. 168

39.788

100

0.399