Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   AB2M34_RS14915 Genome accession   NZ_CP161903
Coordinates   2759161..2760297 (-) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain DYJ24     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2754161..2765297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2M34_RS14875 (AB2M34_14875) xre 2754505..2754846 (+) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -
  AB2M34_RS14880 (AB2M34_14880) xkdA 2755009..2755605 (+) 597 WP_003232721.1 ImmA/IrrE family metallo-endopeptidase -
  AB2M34_RS14885 (AB2M34_14885) xpdC 2755649..2756485 (-) 837 WP_003245071.1 manganese catalase family protein -
  AB2M34_RS14890 (AB2M34_14890) pghB 2756562..2757164 (-) 603 WP_014479547.1 poly-gamma-glutamate hydrolase family protein -
  AB2M34_RS14895 (AB2M34_14895) yjqA 2757269..2757646 (+) 378 WP_014479546.1 PH domain-containing protein -
  AB2M34_RS14900 (AB2M34_14900) xlyB 2757686..2758639 (-) 954 WP_014479545.1 N-acetylmuramoyl-L-alanine amidase -
  AB2M34_RS14905 (AB2M34_14905) yjpA 2758760..2759006 (+) 247 Protein_2942 YciI family protein -
  AB2M34_RS14910 (AB2M34_14910) phrA 2759037..2759171 (-) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  AB2M34_RS14915 (AB2M34_14915) rapC 2759161..2760297 (-) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  AB2M34_RS14920 (AB2M34_14920) - 2760442..2760615 (-) 174 Protein_2945 ATPase -
  AB2M34_RS14925 (AB2M34_14925) - 2760710..2761860 (+) 1151 WP_087614160.1 IS3 family transposase -
  AB2M34_RS14930 (AB2M34_14930) yjoB 2761902..2763002 (-) 1101 Protein_2947 ATPase YjoB -
  AB2M34_RS14935 (AB2M34_14935) bstD 2763151..2763615 (+) 465 WP_014479541.1 DinB family protein -
  AB2M34_RS14940 (AB2M34_14940) yjnA 2763834..2764598 (+) 765 WP_014476525.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=919531 AB2M34_RS14915 WP_015252291.1 2759161..2760297(-) (rapC) [Bacillus subtilis strain DYJ24]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=919531 AB2M34_RS14915 WP_015252291.1 2759161..2760297(-) (rapC) [Bacillus subtilis strain DYJ24]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AGGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTCGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418